Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0636
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.9  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   3.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.0  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 100 TKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHCTL 237
           TK+    S DW  +  Q   + Y +  L+   K L YL L ++C L
Sbjct: 502 TKFFQSTSIDWVEAGLQVCRQGYNMLQLLIHRKGLTYLHLDYNCNL 547


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 292 STKPTPNQESPIDIKT 245
           S++PTPN  SP+D+++
Sbjct: 593 SSRPTPNASSPLDVRS 608


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 103 KYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHC 231
           KY+ + S         +LWK+  I   I   K+L+  + +FHC
Sbjct: 470 KYLAEFSASLELDPNLALWKKQVIFSKIGHPKLLVMPISSFHC 512


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 324 RRLEETYTCISAVCDITTSILHFIQC 401
           RRLE +     AV DI   I+++++C
Sbjct: 177 RRLENSQISPEAVNDIQEDIMYYVEC 202


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 312 IKLKITNQPSQHPTKSHQSTSKHLMQS 232
           I    TNQP  HPT    S S  L+ S
Sbjct: 167 IMASATNQPLSHPTIVPSSNSSSLLNS 193


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 342 MSPPTSFYCLIKLKITNQPSQHPTKSHQSTS 250
           +SPP+ F+ +    + N P   P  S+ S S
Sbjct: 218 ISPPSDFFSVHSHNLPNAPPSIPANSNNSAS 248


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 425 LSSINICRSLQIQQPTDRLIIKTI 496
           +S +   R LQ+  PTDRL++  I
Sbjct: 443 ISELEKTRILQVDNPTDRLVLVLI 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,237
Number of Sequences: 5004
Number of extensions: 54629
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)