Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0636
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.46 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.6  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 4   NLKELYTYSQNYKSISI*IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 183
           N+K+    S+ Y + S  + NRT D   TSSR     + S D +   R+   K+ + + L
Sbjct: 199 NIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRK---KDRQYEKL 255

Query: 184 IQEAKVLL 207
             E + LL
Sbjct: 256 HNEKEKLL 263


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 324 RRLEETYTCISAVCD 368
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 324 RRLEETYTCISAVCD 368
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 324 RRLEETYTCISAVCD 368
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 314  SSNLKSQINQANTQPRVTNRHQNI 243
            SSN   QI Q   +  VTN+ Q+I
Sbjct: 1054 SSNQSQQIQQQQLKRVVTNQQQSI 1077


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 589 QFXKYNVDTPNR 624
           Q   +N+DTPNR
Sbjct: 46  QLSPFNIDTPNR 57


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 484 YESVCGLLNL**STNINRTQI 422
           Y SVC  LNL  S ++  TQ+
Sbjct: 32  YLSVCERLNLALSLSLTETQV 52


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 253 CRLVTLGWVLAWL 291
           C LV + WV  WL
Sbjct: 253 CMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 253 CRLVTLGWVLAWL 291
           C LV + WV  WL
Sbjct: 253 CMLVIVSWVSFWL 265


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 333 EETYTCISAVCDIT 374
           EETY    A CD+T
Sbjct: 358 EETYALAPAGCDLT 371


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 345 YMSPPTSFYCLIKLKITNQPSQHPTKSHQST 253
           +  P    YC  +L  TN P    TK+   T
Sbjct: 3   FKQPNRPSYCTWELNATNSPHTCRTKNGDYT 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,273
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)