Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0635
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   106   2e-24
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   106   2e-24
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.019
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   2.8  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.6  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.6  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.6  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  106 bits (255), Expect = 2e-24
 Identities = 53/83 (63%), Positives = 60/83 (72%)
 Frame = +1

Query: 7   QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 186
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 187 VSIRGRILTXVVQKMKMQRTIVI 255
           VSIRGRILT  V   KM RTI+I
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIII 83



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 39/57 (68%), Positives = 52/57 (91%)
 Frame = +3

Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
           RR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  106 bits (255), Expect = 2e-24
 Identities = 53/83 (63%), Positives = 60/83 (72%)
 Frame = +1

Query: 7   QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 186
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 187 VSIRGRILTXVVQKMKMQRTIVI 255
           VSIRGRILT  V   KM RTI+I
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIII 83



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 39/57 (68%), Positives = 52/57 (91%)
 Frame = +3

Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
           RR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 354 IGDIVTIGECRPLSKTVRFNVLKV 425
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 125 LKPRPTSLWYLNGFLLRFTP 66
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 348 VEIGDIVTIGECRPLSKTVRFNVL 419
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 165
           G+K + +P  Y   VGLG K  +  I  T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 71  TPIPFLRFRKTVGCFWNER 15
           T   F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 240 ENYRDRRDYLHYLPKYNRFEKR 305
           E ++ + DY  +LPK   FEK+
Sbjct: 142 ELFQSQNDYSRFLPKRKDFEKK 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,586
Number of Sequences: 5004
Number of extensions: 33705
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)