Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0635
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   3e-26
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.059
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   6.7  
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       27   8.9  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  115 bits (276), Expect = 3e-26
 Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
 Frame = +1

Query: 1   ADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REAI 144
           A+QTER++QKQ  +F NRK+ +G    +K LR+ ++VGLGFKTP            REAI
Sbjct: 2   AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61

Query: 145 EGTYIDKKCPFTGNVSIRGRILTXVVQKMKMQRTIVI 255
           EGTYIDKKCPFTGNVSIRGRILT + + MKM+RTI+I
Sbjct: 62  EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIII 98



 Score =  110 bits (264), Expect = 7e-25
 Identities = 43/57 (75%), Positives = 53/57 (92%)
 Frame = +3

Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
           RRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 99  RRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 357 GDIVTIGECRPLSKTVRFNVLKV 425
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 108 ILVVSQRFSAPLHTNTFLAVQ 46
           ILV+ Q F  P HTN F+A Q
Sbjct: 78  ILVLVQPFPLPYHTNAFIAAQ 98


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 149 PSIASRGVLKPRPTSLWYLNG 87
           P++  +GV  PRPT  WY  G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674


>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 168
           + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 271 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 58   KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 168
            + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 1552 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,405
Number of Sequences: 59808
Number of extensions: 259310
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)