Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0635
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   111   4e-25
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.84 
Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   7.8  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   7.8  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   7.8  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  111 bits (266), Expect = 4e-25
 Identities = 55/85 (64%), Positives = 66/85 (77%)
 Frame = +1

Query: 1   ADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFT 180
           ++QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+ 
Sbjct: 2   SEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 181 GNVSIRGRILTXVVQKMKMQRTIVI 255
           GNV IRG ILT VV K KM RTIV+
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVV 85



 Score =  102 bits (244), Expect = 2e-22
 Identities = 43/57 (75%), Positives = 49/57 (85%)
 Frame = +3

Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
           RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 86  RRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 419 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 315
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical
           protein R07B1.6 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 205 ILTXVVQKMKMQRTIVIAAITF---TTYPNTIGSRNGTGTCPYICRLASGTW 351
           ++T   ++  +  T V+  ITF   +  P  +G+ NG GT   +    +G W
Sbjct: 70  VITYTCERTPVVATDVVL-ITFYSDSQNPTDVGTENGVGTANVVMNCVNGQW 120


>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 201 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 67
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 201 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 67
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 27   KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 134
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,521
Number of Sequences: 27780
Number of extensions: 197765
Number of successful extensions: 585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)