Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0635
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 113 6e-26
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 111 3e-25
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 107 4e-24
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.45
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.59
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 29 2.4
At5g17670.1 68418.m02071 expressed protein 27 5.5
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 27 9.6
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 9.6
At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family pr... 27 9.6
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 27 9.6
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 9.6
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 113 bits (272), Expect = 6e-26
Identities = 54/86 (62%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 177
A+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61
Query: 178 TGNVSIRGRILTXVVQKMKMQRTIVI 255
TG VSIRGRIL+ KMQRTI++
Sbjct: 62 TGTVSIRGRILSGTCHSAKMQRTIIV 87
Score = 94.3 bits (224), Expect = 4e-20
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +3
Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 88 RRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 111 bits (266), Expect = 3e-25
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 177
A+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61
Query: 178 TGNVSIRGRILTXVVQKMKMQRTIVI 255
TG VSIRGRIL KMQRTI++
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIV 87
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +3
Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 88 RRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 107 bits (257), Expect = 4e-24
Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 177
A+QTE++F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61
Query: 178 TGNVSIRGRILTXVVQKMKMQRTIVI 255
TG VSIRGRIL KMQRTI++
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIV 87
Score = 89.8 bits (213), Expect = 9e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +3
Query: 255 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 88 RRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 88 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 174
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 279 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 425
PKY R + + H P ++GD+V + + RP+SKT F L V
Sbjct: 77 PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2
GI:12597460
Length = 1691
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 228 DEDAENYRDRRDYLHY---LP-KYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 395
+ + Y +R+D+ H P KY + + SV P F+D +IG I + RP+S
Sbjct: 791 EAQSSQYAERKDHKHSDVRAPSKYFEVKAEVSDFSVQTRPGFKDTKIGIAENIPKQRPVS 850
Query: 396 K 398
+
Sbjct: 851 Q 851
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 134 RGVLKPRPTSLWYLN 90
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 24 PKTTYSLSEPQERYWCEAEQKTVEIPQGC 110
P + S SE Q++Y C + + T ++ GC
Sbjct: 833 PFSEKSTSEKQKQYNCSSSENTSDVNDGC 861
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 106 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL 210
D+G+GF ++G +D +G+ S+R R++
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLI 398
>At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 471
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 231 EDAENYRDRRDYLHYLPK 284
ED + ++RRDY HY P+
Sbjct: 335 EDFDQTKNRRDYYHYTPE 352
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 183 ASEGTLLVNVG---TLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 40
++EG+ L G +LNRL + +E H V+ +S LHT + A D
Sbjct: 495 SAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHYSQYLHTASSTAAPID 545
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRPLSKTVRFNVLKV 425
D L + YNR+ KR H +D IGD V + RPLSK + V ++
Sbjct: 22 DRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRPLSKNKHWIVAEI 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,650
Number of Sequences: 28952
Number of extensions: 183457
Number of successful extensions: 450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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