Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0634
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    38   7e-04
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   2.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   7.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   9.3  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 337 RHHRLHHAHFATENDPFDYNQGFAYAHI 420
           R HR HH +  T+ DP++  +GF YAH+
Sbjct: 145 RDHRAHHRYTDTDKDPYNVKKGFWYAHV 172



 Score = 30.3 bits (65), Expect = 0.14
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 173 TVIFLITLTFPAILAMTTGAHRLWAHRITK 262
           T+IF I     + L +T G HRLW+HR  K
Sbjct: 90  TLIFAIIYYAYSGLGITAGYHRLWSHRAYK 119


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 88  VCFSLVTEIYFLCWS 44
           VC S+ +EIY LCWS
Sbjct: 123 VCRSMGSEIYDLCWS 137


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 FNNIDISRHTRNDDRSSSTLGAPYYKAS 267
           + N  I   TR + RSS T G P+  +S
Sbjct: 397 YRNNQIGPRTRTEGRSSITEGKPFLSSS 424


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 172 HPFNFIYQKVNSIKREQMYVNEKKYSGPVCFSLVTEIY 59
           HPFN   Q + +I  E +Y  E   S     S  T+I+
Sbjct: 409 HPFNINSQSITNILPEGLYPPEVSESSFAAASRKTDIW 446


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 163 NFIYQKVNSIKREQMYVNEKKYSGPVCFSLVTEIYFLCWSRRL 35
           +FI    N I    +YVN+ K    +CF +     F  WS +L
Sbjct: 355 HFIISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPWSFQL 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,412
Number of Sequences: 5004
Number of extensions: 29411
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)