Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0634
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               49   2e-06
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 25   2.7  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     28   3.1  
SB_31975| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 27   7.1  
SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)                  27   7.1  
SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/61 (32%), Positives = 36/61 (59%)
 Frame = +1

Query: 256 YKASTELRIVXMLLQTLXGVGPIYNXVRHHRLHHAHFATENDPFDYNQGFAYAHIFTRMR 435
           +KA   LR+V ML+ ++     I+   R HR+HH +  T+ DP +  +GF ++H+   M+
Sbjct: 33  FKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQ 92

Query: 436 K 438
           +
Sbjct: 93  R 93



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 218 MTTGAHRLWAHRITK 262
           +T GAHRLWAHR  K
Sbjct: 20  VTIGAHRLWAHRTFK 34


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 280 IVXMLLQTLXGVGPIYNXVRHHRLHHAH 363
           I+ +++       P ++ + HHR HH H
Sbjct: 555 IIIVIIIIAISTHPHHHHLHHHRHHHRH 582



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 337 RHHRLHHAHF 366
           RHH  HH H+
Sbjct: 581 RHHHYHHHHY 590


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 340  HHRLHHAHFATENDPFDYNQGFAYAHIFTRMRK 438
            HHR HH H   E   + Y     Y H+   M K
Sbjct: 1389 HHRRHHHHSRPEVPDYSYGHTKYYLHLKKLMEK 1421


>SB_31975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 178 HIFNNIDISRHTRNDDRSSSTLGAPYYKASTELRIVXMLLQTLXGVGPIYNXVRHHRLHH 357
           H  N + + +HT N  +   T+     K +  +  V   +  L G+G I + +R H++ H
Sbjct: 96  HTINMLKV-KHTINMLKVKHTINMLKVKHTINMLKVKHTINMLKGLGIISHLLRKHQIIH 154

Query: 358 AH 363
            H
Sbjct: 155 IH 156


>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 310 GVGPIYNXVRHHRLHHAHFATENDPFDYNQGFAY 411
           G+ P  + +R  R+   H  T ++PFDYN    Y
Sbjct: 208 GIYPCLSLIRGQRVS-VHLGTPSNPFDYNPPEGY 240


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 190  Y*KYDRHPFNFIYQKVNSIKREQMYVNEKKYSGPVCFSLVTEIYFLC 50
            Y K ++H F++IY   +S+   +   ++K  +GP C       ++LC
Sbjct: 996  YLKPNKHRFSYIYYTNSSMNVSESVTHQK--AGPGCRCSANGTWYLC 1040


>SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = -3

Query: 124 QMYVNEKKYSGPVCFSLVTEIYFLCWSRRL----LSVFH---FGFYH 5
           Q  + EK+        +VT +YF+CW   L    +S FH   +G++H
Sbjct: 223 QRPIIEKRQKAVRMMLVVTVLYFVCWLPNLVLYMMSQFHSDVYGYFH 269


>SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)
          Length = 256

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 190 Y*KYDRHPFNFIYQKVNSIKREQMYVNEKKYSGPVCFSLVTEIYFLC 50
           Y K ++H F++IY   +S+   +   ++K  +GP C       ++LC
Sbjct: 169 YLKPNKHRFSYIYYTNSSMNVSESVTHQK--AGPGCRCSANGTWYLC 213


>SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 229 SSSTLGAPYYKASTE-----LRIVXMLLQTLXGVGPIYNXVRHHRLHHAHFATENDP 384
           SSS+L  P   +ST      + I+ +++ T      + +   HHR HH H    + P
Sbjct: 10  SSSSLSPPPSPSSTNHHYPTITIIIVIITTTINQPSLSHHHNHHRHHHHHHHHHHQP 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,991
Number of Sequences: 59808
Number of extensions: 220373
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)