Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0634
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.87 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +1

Query: 178 HIFNNIDISRHTRNDDRSSSTLGAPYYKASTELRIVXMLLQTLXGVGPIYNXVRHHRLHH 357
           ++ +N D S    + + S+S     Y + S    ++ +         PIY    HH LHH
Sbjct: 21  YLLDNNDSSGIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQS--HHHLHH 78

Query: 358 AHFATENDPF 387
                +  P+
Sbjct: 79  HQVLYQQSPY 88


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 283 VXMLLQTLXGVGPIYN 330
           + ML  TL G+G +YN
Sbjct: 370 IVMLTLTLPGIGVVYN 385


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 173 TVIFLITLTFPAILAMTTGAHRLWAHR 253
           T  FLI +  P +L +       W HR
Sbjct: 244 TGYFLIQVYVPCVLIVVLSWVSFWIHR 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,849
Number of Sequences: 438
Number of extensions: 2029
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)