Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0632
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   0.95 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   2.9  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   3.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   5.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    23   6.7  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    23   6.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    23   6.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    23   8.8  

>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 196 PKETNPGDVPPPPSNATQ 249
           P E  P  +PPPP NA Q
Sbjct: 770 PFEMRPTAIPPPPKNAFQ 787


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = +1

Query: 88  PPRMPFRP--PNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPPPPSNATQGSP 258
           PP  P RP  P S+ P  + + K                        PPPPS   +G P
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP 325


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 209 IPATYPH-HRPMQHKXLHNTDSKGY 280
           +P  Y H H P+ HK L N  S  Y
Sbjct: 168 LPPLYTHNHDPVDHKSLKNFYSSNY 192


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +1

Query: 88  PPRMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPPPPSNATQGS 255
           PP  P  PP S   N+ +               N  P    P   P PP+NA+  S
Sbjct: 240 PPPPPTLPPQST--NTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRS 293


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 85  SFHYQNLEVRLVQKAVEDL 29
           +FHY N ++RLV  ++ +L
Sbjct: 71  AFHYHNKKIRLVDTSLNNL 89


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 29  EVLDRLLDQTDLQILIVETAHHACRSG 109
           E +DRL D+T L  L+V +  +  R G
Sbjct: 475 EYIDRLKDETSLYTLLVRSQGYLERIG 501


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 94  RMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPPPPSNATQG 252
           R P   P+ + P S+E+             +NR    T+P   PPPPS    G
Sbjct: 338 RSPLNSPSQLDPISNENES--DTDDSNTGLRNR----TSPTAAPPPPSRRKTG 384


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 63  RSVWSKRRSRTSEGHVI 13
           +S+WSKR SR   GH +
Sbjct: 456 KSLWSKRFSRFYYGHYV 472


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 162 RWGNLSRFVRIGGNRIRGPERHAWW 88
           +W NL R +  G    RG +  ++W
Sbjct: 337 QWSNLIRLINRGVRWFRGRKSESFW 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,232
Number of Sequences: 5004
Number of extensions: 17945
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)