Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0632
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.75 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 202 ETNPGDVPPPPSNATQGSP*YRLXGIQDV 288
           +T P   PPPP  ++ G    +L  I D+
Sbjct: 336 DTPPKPAPPPPPPSSSGPDSAKLDKIFDI 364


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 196  PKETNPGDVPPPPSNATQGS 255
            P   +P   PPPP N  Q +
Sbjct: 1852 PVSGSPEPPPPPPRNHDQNN 1871


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 73  DSGNCPPRMPFRPPNSVTPNSHES 144
           DS +       RPP S + N HE+
Sbjct: 261 DSSDSGAAASDRPPASASSNEHEA 284


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 223  PPPPSNATQG 252
            PP P+NA QG
Sbjct: 999  PPQPANAQQG 1008


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 236  DGGGGTSPGFVSLGXL 189
            +GGGG+  G   LG L
Sbjct: 1704 EGGGGSLAGLGGLGGL 1719


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 236  DGGGGTSPGFVSLGXL 189
            +GGGG+  G   LG L
Sbjct: 1700 EGGGGSLAGLGGLGGL 1715


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 199  KETNPGDVPPPPSN 240
            ++  P   PPPPS+
Sbjct: 1351 RQQQPPPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,560
Number of Sequences: 438
Number of extensions: 1371
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)