Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0632
(289 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 2.1
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)... 27 2.1
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 27 2.8
At3g51580.1 68416.m05650 expressed protein 27 2.8
At1g56220.1 68414.m06462 dormancy/auxin associated family protei... 26 4.8
At1g44478.1 68414.m05116 hypothetical protein 26 4.8
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 25 6.4
At5g04510.2 68418.m00450 3-phosphoinositide-dependent protein ki... 25 6.4
At2g19160.1 68415.m02236 expressed protein contains Pfam profile... 25 6.4
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 25 6.4
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 25 6.4
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 25 8.4
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 25 8.4
At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /... 25 8.4
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 25 8.4
At3g04930.1 68416.m00535 expressed protein contains Pfam profil... 25 8.4
At2g21620.2 68415.m02572 universal stress protein (USP) family p... 25 8.4
At2g21620.1 68415.m02571 universal stress protein (USP) family p... 25 8.4
At1g72710.1 68414.m08408 casein kinase, putative similar to case... 25 8.4
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 PPRMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVP---PPP 234
PP P PP +VTP S + K+ P ++ P P PPP
Sbjct: 66 PPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQ--PPQSPPASAPTVSPPP 115
>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
nearly identical to SH3 domain-containing protein 1
[Arabidopsis thaliana] GI:16974676; contains Pfam
profile PF00018: SH3 domain
Length = 439
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +1
Query: 79 GNCPPRMPFRPPNSVT-----PNSHESGKIXXXXXXXXXXQNRXPKETNPGDV-PPPPSN 240
G+ P +P +S + PNS+ SG+I R ++NP +V P P +
Sbjct: 262 GSSPKSLPLHIEDSASLPQQEPNSNSSGEIKSNPLGKIKASRREEIKSNPQEVTKPSPKD 321
Query: 241 ATQGSP 258
+ SP
Sbjct: 322 EMKSSP 327
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 284 SCIPXSLYYGX---PCVALDGGGGTSPGFVSLG 195
SC+ + YG PC G G SPG+ S G
Sbjct: 632 SCVEGGITYGNANLPCELGSGSGDFSPGYSSAG 664
>At3g51580.1 68416.m05650 expressed protein
Length = 390
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 91 PRMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPPP 231
P P PP ++T +S +SGK+ ET PG PP
Sbjct: 107 PMSPPPPPANLT-DSQDSGKLPANMAPPPKSLESGKNETEPGKESPP 152
>At1g56220.1 68414.m06462 dormancy/auxin associated family protein
similar to Auxin-repressed 12.5 kDa protein
(Swiss-Prot:Q05349) [Fragaria ananassa]; similar to
auxin-repressed protein (GI:927034) [Fragaria x
ananassa]; similar to dormancy-associated protein
(GI:2605887) [Pisum sativum]
Length = 137
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = +1
Query: 76 SGNCPPRMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPP 228
+G+ PP PF PP S E + + ET P PP
Sbjct: 83 AGSTPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFEKAAGGSETGPRSSPP 133
>At1g44478.1 68414.m05116 hypothetical protein
Length = 193
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 99 HAWWAVSTIKIWRSVWSKRRSRTSEGHV 16
H + S+ KIWR VW ++ S+ + HV
Sbjct: 61 HVGFNQSSFKIWRQVW-RKDSQHGKDHV 87
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +1
Query: 88 PPRMPFRPPNSVTPNSHESGKIXXXXXXXXXXQNRXPKETNPGDVPPPPSNATQGSP 258
PP P PP P S + N+ P PPPP TQ P
Sbjct: 381 PPPSPPPPPPPPPPPLRSSQSVFYGLFKKGVKSNKKIHSV-PAPPPPPPPRYTQFDP 436
>At5g04510.2 68418.m00450 3-phosphoinositide-dependent protein
kinase, putative similar to 3-phosphoinositide-dependent
protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
Length = 408
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 234 RWWGYVAGICF 202
RWWG+++ ICF
Sbjct: 389 RWWGHLSFICF 399
>At2g19160.1 68415.m02236 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 394
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 165 WRWGNLSRFVRIGGNRIRGPERHAWWAVSTIKI 67
WR G ++ + G R R P R W ++ + +
Sbjct: 7 WRLGKINYMQSLPGARHRAPTRKPIWIIAVLSL 39
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 165 WRWGNLSRFVRIGGNRIRGPERHAWWAV 82
W GNL +R+ G+ +RG + W +V
Sbjct: 377 WLCGNLPLGLRVVGSSLRGKKEDEWKSV 404
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 79 GNCPPRMPFRPPNSVTPNSHE 141
GNCPPR NS TP E
Sbjct: 2010 GNCPPRQTKVVSNSTTPEWKE 2030
>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
ZF-HD homeobox protein-related predicted proteins,
Arabidopsis thaliana
Length = 334
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 190 RXPKETNPGD-VPPPPSNATQGSP*YR 267
R P N +PPPPS A + P +R
Sbjct: 106 RDPDNNNDSSQIPPPPSTAVEYQPHHR 132
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 114 RGPERHAWWAVSTIKIWRSVWSKRRSRTSEGHVIHRV 4
RGP HA A+ T+ +R V + +S +S +H +
Sbjct: 843 RGPRHHASAAIQTLNTFRHVPEEPKSFSSFRERLHHL 879
>At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
polyphosphoinositide binding protein Ssh1p (GI:2739044)
{Glycine max}; similar to polyphosphoinositide binding
protein Ssh2, Glycine max, gb:T05953; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus
Length = 668
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 196 PKETNPGDVPPPPSNAT 246
PK+ P PPPPS T
Sbjct: 241 PKQPEPQTPPPPPSTTT 257
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 85 CPPRMPFRPPNSV 123
CP MP+ PPN+V
Sbjct: 164 CPTYMPYMPPNTV 176
>At3g04930.1 68416.m00535 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 456
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 287 TSCIPXSLYYGXPCVALDGGGGTSPGFVSLGXLF 186
TS + ++ G P + GGGG GF SL +F
Sbjct: 364 TSMMMAAMGGGFPGLGGGGGGGGGHGFGSLSPMF 397
>At2g21620.2 68415.m02572 universal stress protein (USP) family
protein / responsive to dessication protein (RD2) strong
similarity to RD2 protein [Arabidopsis thaliana]
GI:15320408; contains Pfam profile PF00582: universal
stress protein family; identical to cDNA RD2 GI:15320407
Length = 193
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 41 RLLDQTDLQILIVETAHHACRSGPLILLP 127
R L ++ LQ + E H C+S P+I++P
Sbjct: 145 RSLVRSVLQGSVSEYCFHNCKSAPVIIVP 173
>At2g21620.1 68415.m02571 universal stress protein (USP) family
protein / responsive to dessication protein (RD2) strong
similarity to RD2 protein [Arabidopsis thaliana]
GI:15320408; contains Pfam profile PF00582: universal
stress protein family; identical to cDNA RD2 GI:15320407
Length = 187
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 41 RLLDQTDLQILIVETAHHACRSGPLILLP 127
R L ++ LQ + E H C+S P+I++P
Sbjct: 139 RSLVRSVLQGSVSEYCFHNCKSAPVIIVP 167
>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158
Length = 465
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 44 LLDQTDLQILIVETAHHACRSGPLILLPPILTNRER 151
+L QI HH GP LPP +T+ ER
Sbjct: 291 ILKYQQSQISTPPPRHHGPVVGPSSALPPAITSAER 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.137 0.449
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,000
Number of Sequences: 28952
Number of extensions: 112169
Number of successful extensions: 347
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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