Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0630
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.76 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    24   1.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    24   1.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVG 428
           C CS    G+     I  CD + C+N G
Sbjct: 170 CHCSDGYSGSYCQTEINECDSAPCQNGG 197



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +3

Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVGLYVTDYA 449
           C C     G      +  C  S C+N G+  T +A
Sbjct: 324 CNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIHA 358



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVGL 431
           C C    YG         CD + C+N G+
Sbjct: 362 CTCPEGFYGKNCEFSGYDCDSNPCQNGGV 390


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 250 NNTMQHHKHFCLEVSDNC 303
           +N ++   H+CL V+ NC
Sbjct: 106 HNNIREKSHYCLFVASNC 123


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 250 NNTMQHHKHFCLEVSDNC 303
           +N ++   H+CL V+ NC
Sbjct: 106 HNNIREKSHYCLFVASNC 123


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVG 428
           C C +   G   +    HCD + C+N G
Sbjct: 130 CNCKNGWKGKTCSLKDSHCDHTTCKNGG 157



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVGLYV 437
           C C     G   +  I  C ++ CEN G  V
Sbjct: 54  CQCQPGFTGKYCHENINDCKVNPCENGGTCV 84


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 2   PTGACTCRRPQPTHQPALVFIHAGLYQEEC 91
           P GA      +P HQ +    H G Y   C
Sbjct: 67  PRGALGAYPFRPMHQNSYTGYHLGSYAANC 96


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 134 GNVAESVVLEREAESTLTFAEGATRAYAG 220
           GN+ E  VL R      +  + ATR   G
Sbjct: 202 GNILEEFVLSRAGGLVNSLYQNATRKVCG 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,646
Number of Sequences: 336
Number of extensions: 3082
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)