Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0630
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    38   0.006
03_02_0331 - 7527010-7529352                                           30   2.0  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     29   2.6  
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698...    29   3.4  
12_01_0527 - 4177928-4178235,4178849-4181438                           28   6.0  
02_03_0204 - 16369800-16371758,16372260-16372331                       28   6.0  

>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
            6617328-6617469,6617567-6617938,6618056-6618187,
            6618907-6619035,6619125-6621188
          Length = 1176

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/102 (22%), Positives = 42/102 (41%)
 Frame = +1

Query: 184  DVCGGSDSGLCRTHDAQVLTGCNNTMQHHKHFCLEVSDNCSPTIDHCIIRSASVVGAAVC 363
            D+C       C  ++    T C  T+   K  C    D  S   +  ++ S S  G + C
Sbjct: 822  DICKSETDQPCENNEKNQATSCGGTIMVDKQDCYSTKDEGSGHDEELMMNSTSSDGLSSC 881

Query: 364  VTVPARIP*SSTVTLVTARTLVSMSQTTRKALITIMKSQETP 489
             +   R   +S+VT ++A+   S S  + ++   +   +E P
Sbjct: 882  TSEADRESSTSSVTSLSAQHQESSSSDSEESPERVNSIEEAP 923


>03_02_0331 - 7527010-7529352
          Length = 780

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 325 IIRSASVVGAAVCVTVPARIP*SS---TVTLVTARTLVSMSQTTRKALITIMKSQETP 489
           +IR+A+ VGAA   T   R+  +S   +VT+   + + S +  T++  +T+  S  +P
Sbjct: 691 VIRTATNVGAAASATYKPRVEMASSAVSVTIKPEKLVFSPTAKTQRFAVTVASSSSSP 748


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +2

Query: 188  FAEGATRAYAGHMTLKFSPDATIPCSIIST--SVSRSQITVHPQLITVLSGALVLWVQQC 361
            F   +  AY G+  L        PC I ST  S    +  V   +++V+   L+L V  C
Sbjct: 812  FQNASASAYVGNSGLCGDVQGLTPCDISSTGSSSGHHKRVVIATVVSVVGVVLLLAVVTC 871

Query: 362  -ALRCRRESRNQ 394
              L CRR  R +
Sbjct: 872  IILLCRRRPREK 883


>06_02_0248 +
           13468100-13468336,13468426-13468569,13469044-13469808,
           13470272-13470564,13470642-13470833,13471151-13471229,
           13471339-13471431,13471519-13471704
          Length = 662

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 528 CVVTIYITDVTSVYLRSRMD------WVTLKPTIFTTIESPVSKLRPAR 656
           C++ +Y +D+ S+Y R R+D      W  +       ++ PV+ L P R
Sbjct: 452 CLLQVYFSDMHSLYHRKRLDANLIAIWCLMNYVEAEAMKKPVAYLNPCR 500


>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 224  MTLKFSPDATIPCSIISTSVSRSQITVHPQLITVLSGAL 340
            ++L  SPD      I+ T VSR+   VH Q+++VL+ AL
Sbjct: 905  LSLSGSPDQRE--QILDTRVSRTSAAVHSQMLSVLNIAL 941


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 214 CRTHDAQVLTGCNNTMQHHKHFCLEVSDNCSPTIDHCII 330
           CR H+       + +M+ +  F LEVS N   T+ H  I
Sbjct: 181 CRVHNLMHKISVSKSMEENHGFVLEVSSNNEGTVRHLSI 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,704
Number of Sequences: 37544
Number of extensions: 372896
Number of successful extensions: 1109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)