Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0630
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 71 1e-12
SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3) 48 9e-06
SB_29508| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42) 30 2.0
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07) 29 2.6
SB_57193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 29 4.6
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 28 6.1
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 28 6.1
SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +3
Query: 348 GCSSVRYGAGANPVIKHCDISDCENVGLYVTDYAQGAYHDNEISRNALAGIWVK 509
G + +G GA PV+ HC ISD ENVG++VTD AQG Y D EI+ LAG+WV+
Sbjct: 855 GATVYVHGRGARPVVSHCAISDSENVGVFVTDAAQGLYEDCEITNTKLAGVWVR 908
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 515 ANPIMRRNHIHHGRDVGIFTFENGLGYFEAN 607
ANP+MRRN +HHGRDVG F F+ G+ Y + +
Sbjct: 911 ANPVMRRNTVHHGRDVGFFIFDQGMWYSQGD 941
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 557 DVGIFTFENGLGYFEANDIHNNRIAGFEVKAGANPTVVHC 676
D ++ F +G G E N+IH+N +AG +++ +NP +V C
Sbjct: 968 DWRVYVFGDGRGLIEGNNIHDNALAGIQIRTKSNP-IVRC 1006
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 250 NNTMQHHKHFCLEVSDNCSPTIDHCIIRSASVVGAAVCV 366
+ + Q KH C+EV CSPT+ +C + S S GA V V
Sbjct: 822 SQSSQFSKHGCVEVQGECSPTVFNCKLTSLSHAGATVYV 860
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 515 ANPIMRRNHIHHGRDVGIFTFENGLGYFEANDIHNNRIAGFEVKAGANPTV 667
A P++ I +VG+F + G +E +I N ++AG V++ ANP +
Sbjct: 865 ARPVVSHCAISDSENVGVFVTDAAQGLYEDCEITNTKLAGVWVRSQANPVM 915
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 515 ANPIMRRNHIHHGRDVGIFTFENGLG 592
+NP+++RN IH GR+ G+ F G G
Sbjct: 1072 SNPVLKRNKIHDGREGGVCIFNGGRG 1097
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 56 VFIHAGLYQEECLAIDSDVQLIGCATGN 139
+F+HAGLYQE L I+ + LIG A G+
Sbjct: 772 IFVHAGLYQES-LVINKPLSLIGVAFGD 798
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 450 QGAYHDNEISRNALAGIWVK 509
QG +NEI NA+AG+W+K
Sbjct: 1050 QGVLEENEIFDNAMAGVWIK 1069
Score = 25.8 bits (54), Expect(2) = 0.63
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 590 GYFEANDIHNNRIAGFEVKAGANPTV 667
G E N+I +N +AG +K +NP +
Sbjct: 1051 GVLEENEIFDNAMAGVWIKTESNPVL 1076
Score = 24.2 bits (50), Expect(2) = 0.63
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 515 ANPIMRRNHIHHGRDVGIF 571
+NPI+R N IH G GI+
Sbjct: 1000 SNPIVRCNKIHSGLHGGIY 1018
>SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3)
Length = 367
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 515 ANPIMRRNHIHHGRDVGIFTFENGLGYFEANDIHNNRIAGFEVKAGANPTVVH 673
++PI++ NHIH G+ G+ + G G NDI++N AG + NP V H
Sbjct: 272 SDPIIQHNHIHSGKRSGVVVLDRGRGLVRDNDIYDNNEAGVYILYRGNPVVRH 324
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 518 NPIMRRNHIHHGRDVGIFTFENGLGYFEANDIHNNRIAGFEVKAGANP 661
NP++R N I GR GI E+G G+ NDI G +++ G NP
Sbjct: 319 NPVVRHNRIWSGRAAGIAITEDGRGHISHNDICGMEWGGVDIRNGGNP 366
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 378 ANPVIKHCDISDCENVGLYVTDYAQGAYHDNEISRNALAGIWV 506
++P+I+H I + G+ V D +G DN+I N AG+++
Sbjct: 272 SDPIIQHNHIHSGKRSGVVVLDRGRGLVRDNDIYDNNEAGVYI 314
>SB_29508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 521 PIMRRNHIHHGRDVGIFTFENGLGYFEANDIHNNRIAGFEVKAGANP 661
P++R N I G GI N G E N++ NNR G + G P
Sbjct: 24 PVLRNNRIFDGGAAGIEVTNNAGGTLENNEVFNNRFDGICLATGVKP 70
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 354 SSVRYGAGANPVIKHCDISDCENVGLYVTDYAQGAYHDNEISRNALAGI 500
+ V + PV+++ I D G+ VT+ A G +NE+ N GI
Sbjct: 14 TGVLISTSSYPVLRNNRIFDGGAAGIEVTNNAGGTLENNEVFNNRFDGI 62
>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 214 CRTHDAQVLTGCNNTMQHHKHFCLEV---SDNCSPT--IDHCIIRSASVVGAAVCVTVPA 378
C T D V C+NT H + C + NC T + ++ +V+ V VT+
Sbjct: 336 CHTTDCHVTNSCHNTDCHVTNSCHTTDCHATNCHNTTAMSQTVVTLQTVMSQTV-VTLQT 394
Query: 379 RIP*SSTVTLVTARTLVSMSQTTRKALITI 468
+ + T+ V ++T+V++ + ++T+
Sbjct: 395 AMSQTVTIQTVMSQTVVTIQTVMSQTVVTL 424
>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
Length = 1264
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +1
Query: 256 TMQHHKHFCLEVSDNCSPTIDHCIIRSASVVGAAVCVTVPARIP*SSTVTLVTARTLVSM 435
+ Q K FC +++ + T II + ++ +TV I ++ +T +T +T +++
Sbjct: 1029 SFQMEKEFCARLTNILNITATAVIIIAVTITTTTTTITVTITITITTAIT-ITTKTSIAI 1087
Query: 436 SQTTRKALITIMKSQETPLLA 498
T + I + P++A
Sbjct: 1088 INITISVITIINATTTIPVIA 1108
>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
Length = 530
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Frame = +2
Query: 59 FIHAGLYQEECLAIDSDVQLIGCATGNVAESVVLEREAESTLTFAEGATRAYAGHMTLKF 238
FIH + + L++DS+ ++G G E ++ + S+ + G+T + G +TLK
Sbjct: 48 FIHLSILRSTILSMDSNEDVLG--NGFPEEKKMIPDDEGSSSS--SGSTDSERGKITLKK 103
Query: 239 SPDATIPCSIISTSVSRSQITVHPQLITVLSG----ALVLWV 352
+ II+ +V S I + P I +G AL++W+
Sbjct: 104 NITMVNGIGIIAGTVIGSGIFISPTGIQKEAGSIGLALLIWL 145
>SB_57193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 558 TSVYLRSRMDWVTLKPTIFTTIESPVSKLRPARTPP 665
T+ + R D+V L + T +++P S L+PARTPP
Sbjct: 15 TNAGWQGRGDYVDLADSYSTIVKAP-SLLQPARTPP 49
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 345 CGCSSVRYGAGANPVIKHCDISDCENVGLYVTDYAQGAYH 464
C CS+ G+ +K CD S C+N + D Y+
Sbjct: 104 CTCSTGFTGSDCETQVKPCDSSPCKNNATCINDKDNSGYN 143
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 149 SVVLEREAESTLTFAEGATRAYAGHMTLKFSPDATIPCSIISTSVSRSQITVHPQLITVL 328
S VL R ++ +L GA YAG ++ FS +P S R + HP TVL
Sbjct: 174 SSVLCRRSKRSLPQL-GAPAKYAGSSSMSFSVFLVLPYSKTIAFHRRERCLTHPVSFTVL 232
Query: 329 S 331
S
Sbjct: 233 S 233
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 459 YHDNE-ISRNALAGIWVKILPTLLCVVTIYITDVTSVYLRSRMDWVT 596
YH N+ SRN A I ILP L C + + I+D S+ LR +V+
Sbjct: 671 YHPNDTFSRNLRAYIST-ILPFLKCKMDVQISDKKSMVLRFVTSYVS 716
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 230 ASCVRHKPESLPPQTSASIPLHAQVLQ 150
A+ V P+++PPQTS+S+ QV Q
Sbjct: 1306 ATRVSTMPQTMPPQTSSSVAHQGQVFQ 1332
>SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 41 HQPALVFIHAGLYQEECLAIDSDVQLIGCAT 133
H+ L L +E+C+ +D+D + GCAT
Sbjct: 35 HEGDLDVTQRRLLEEQCILVDTDDNVQGCAT 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,650
Number of Sequences: 59808
Number of extensions: 438338
Number of successful extensions: 1403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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