Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0630
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.054
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 661 GVRAGLNFETGDSIVVNIVGFKVTQSI 581
           GV  G+NF+  D+I VN+ G  V Q I
Sbjct: 169 GVEIGINFDKYDNIQVNVSGDNVPQPI 195


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = +1

Query: 316  DHCIIRSASVVGAAVCVTV--PARIP*SSTVTLVTARTLVSMSQ-----TTRKALITIMK 474
            DHC+    SVV   V  T+  P     S + T V   +L + S      T  K +I  +K
Sbjct: 821  DHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVK 880

Query: 475  SQET 486
            +Q T
Sbjct: 881  TQIT 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,924
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)