Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O60337 Cluster: E3 ubiquitin-protein ligase MARCH6; n=3...    64   3e-09
UniRef50_Q16FZ7 Cluster: Ssm4 protein; n=3; Endopterygota|Rep: S...    58   1e-07
UniRef50_Q9W023 Cluster: CG1317-PB; n=4; Sophophora|Rep: CG1317-...    56   5e-07
UniRef50_Q4SVD6 Cluster: Chromosome undetermined SCAF13763, whol...    42   0.016
UniRef50_Q5BST6 Cluster: SJCHGC03292 protein; n=1; Schistosoma j...    40   0.037
UniRef50_UPI0000660E0C Cluster: E3 ubiquitin-protein ligase MARC...    39   0.11 
UniRef50_Q101N9 Cluster: Serine carboxypeptidase 1; n=1; Triatom...    37   0.46 
UniRef50_A0K330 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q8ND61 Cluster: Uncharacterized protein C3orf20; n=14; ...    33   5.7  
UniRef50_Q1Q264 Cluster: Similar to dihydroxyhexaprenylbenzoate ...    33   7.5  
UniRef50_UPI000050F80A Cluster: COG0028: Thiamine pyrophosphate-...    32   9.9  
UniRef50_Q4V2F4 Cluster: Putative uncharacterized protein; n=2; ...    32   9.9  
UniRef50_Q5W680 Cluster: Putative uncharacterized protein OSJNBa...    32   9.9  

>UniRef50_O60337 Cluster: E3 ubiquitin-protein ligase MARCH6; n=38;
           Eumetazoa|Rep: E3 ubiquitin-protein ligase MARCH6 - Homo
           sapiens (Human)
          Length = 910

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +1

Query: 55  TFQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHS 168
           +FQ+RQF++LYEHIKNDKYLVGQRLVNY+ +  KQ  S
Sbjct: 864 SFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGSS 901


>UniRef50_Q16FZ7 Cluster: Ssm4 protein; n=3; Endopterygota|Rep: Ssm4
           protein - Aedes aegypti (Yellowfever mosquito)
          Length = 760

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 28/42 (66%), Positives = 34/42 (80%), Gaps = 2/42 (4%)
 Frame = +1

Query: 58  FQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQK--QQHSSAV 177
           F   QF+KLY  IKNDKYLVGQRLVNYDH+R+K  QQ ++A+
Sbjct: 667 FFTNQFKKLYVAIKNDKYLVGQRLVNYDHQRKKAAQQAAAAI 708


>UniRef50_Q9W023 Cluster: CG1317-PB; n=4; Sophophora|Rep: CG1317-PB -
            Drosophila melanogaster (Fruit fly)
          Length = 988

 Score = 56.4 bits (130), Expect = 5e-07
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 58   FQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQ 162
            FQI Q +KLY  IK DKYLVGQRLVNY+HR+++QQ
Sbjct: 914  FQIDQLKKLYLSIKVDKYLVGQRLVNYEHRKKQQQ 948


>UniRef50_Q4SVD6 Cluster: Chromosome undetermined SCAF13763, whole
            genome shotgun sequence; n=6; Euteleostomi|Rep:
            Chromosome undetermined SCAF13763, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1441

 Score = 41.5 bits (93), Expect = 0.016
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 55   TFQIRQFRKLYEHIKNDK 108
            TFQIRQFR+LYEHIKNDK
Sbjct: 995  TFQIRQFRRLYEHIKNDK 1012


>UniRef50_Q5BST6 Cluster: SJCHGC03292 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC03292 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 73

 Score = 40.3 bits (90), Expect = 0.037
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +1

Query: 58  FQIRQFRKLYEHIKNDKYLVGQRLVNY 138
           F I Q R+LY HIK++KYLVG++LVN+
Sbjct: 33  FCIDQIRRLYIHIKDEKYLVGRQLVNF 59


>UniRef50_UPI0000660E0C Cluster: E3 ubiquitin-protein ligase MARCH6
           (EC 6.3.2.-) (Membrane-associated RING finger protein 6)
           (Membrane-associated RING-CH protein VI) (MARCH-VI)
           (RING finger protein 176) (Protein TEB-4) (Doa10
           homolog).; n=1; Takifugu rubripes|Rep: E3
           ubiquitin-protein ligase MARCH6 (EC 6.3.2.-)
           (Membrane-associated RING finger protein 6)
           (Membrane-associated RING-CH protein VI) (MARCH-VI)
           (RING finger protein 176) (Protein TEB-4) (Doa10
           homolog). - Takifugu rubripes
          Length = 1194

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = +1

Query: 55  TFQIRQFRKLYEHIKNDK 108
           +FQIRQFR+LY+HIKNDK
Sbjct: 754 SFQIRQFRRLYQHIKNDK 771


>UniRef50_Q101N9 Cluster: Serine carboxypeptidase 1; n=1; Triatoma
           infestans|Rep: Serine carboxypeptidase 1 - Triatoma
           infestans (Assassin bug)
          Length = 474

 Score = 36.7 bits (81), Expect = 0.46
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = -1

Query: 409 QVDVGTNKISVQLFFIFLFPLLKATFLFIVLNGKGGKYERSFDFRIVEKTPL*TEALRMR 230
           QVDVG N  +    F+ LFP L+   L+I      GKY  +  + I E   + TE + ++
Sbjct: 179 QVDVGQNLHTALQQFLTLFPKLRTNDLYITGESYAGKYIPALAYTIDEYNNVATETVNLK 238

Query: 229 SI*IFRG 209
            I I  G
Sbjct: 239 GIAIGDG 245


>UniRef50_A0K330 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia cenocepacia HI2424|Rep: Putative
           uncharacterized protein - Burkholderia cenocepacia
           (strain HI2424)
          Length = 309

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 99  ERQVPGRSAARELRSPETEAAAQ--QCRHVDKLKPVRSVPLKIYIDLILRASV*SGVFST 272
           E   P   A R+LR+   E AA+    R +  L+ V SVP+ + I L+L  SV  G F T
Sbjct: 197 EELSPHTEAQRQLRASAIEIAAEVLAMRRLVLLQAVGSVPMPLLITLVLWLSVIFGAFGT 256


>UniRef50_Q8ND61 Cluster: Uncharacterized protein C3orf20; n=14;
           Eutheria|Rep: Uncharacterized protein C3orf20 - Homo
           sapiens (Human)
          Length = 904

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 51  EDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAA 161
           E  P  P++KT + H + +V  R  ARE RSP   AA
Sbjct: 625 ESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWAA 661


>UniRef50_Q1Q264 Cluster: Similar to dihydroxyhexaprenylbenzoate
           methyltransferase; n=1; Candidatus Kuenenia
           stuttgartiensis|Rep: Similar to
           dihydroxyhexaprenylbenzoate methyltransferase -
           Candidatus Kuenenia stuttgartiensis
          Length = 282

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = +3

Query: 339 AFSKGNKKIKNN*TDILFVPTSTCIMKSNFKNIYIRFNLY*LLA*ILPSSPRSLTFSLNY 518
           A  K +  +K     +L VP +T I++      +I+ NLY     +   SP ++T  L  
Sbjct: 164 AVKKIHSLLKPGGVFVLRVPHTTPIVRL-LSLFHIKNNLYDTPYHLYDFSPETITVLLKK 222

Query: 519 SNTTKILLSP*LPTVVVGASRKIVTLT 599
           +  T + + P  PT+ V    KIV++T
Sbjct: 223 AGFTTVQVKPGTPTLPVNFLEKIVSIT 249


>UniRef50_UPI000050F80A Cluster: COG0028: Thiamine
           pyrophosphate-requiring enzymes [acetolactate synthase,
           pyruvate dehydrogenase (cytochrome), glyoxylate
           carboligase, phosphonopyruvate decarboxylase]; n=1;
           Brevibacterium linens BL2|Rep: COG0028: Thiamine
           pyrophosphate-requiring enzymes [acetolactate synthase,
           pyruvate dehydrogenase (cytochrome), glyoxylate
           carboligase, phosphonopyruvate decarboxylase] -
           Brevibacterium linens BL2
          Length = 573

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 63  DPPIQKTIRTHKERQVPGRSAARELRSPETEAAA 164
           D  +  TIR H++R+ PGR+    L SP+  A A
Sbjct: 495 DNSVYGTIRGHQDREYPGRATGTSLSSPDFAALA 528


>UniRef50_Q4V2F4 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia mallei|Rep: Putative uncharacterized
           protein - Burkholderia mallei (Pseudomonas mallei)
          Length = 1477

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 87  RTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVP 212
           R H+  + P R+  R+ R    + A Q+ RHVD +   RS P
Sbjct: 9   RAHRAARRPSRARRRDARRAARDPARQRARHVDPVPGRRSEP 50


>UniRef50_Q5W680 Cluster: Putative uncharacterized protein
           OSJNBa0076A09.17; n=2; Oryza sativa|Rep: Putative
           uncharacterized protein OSJNBa0076A09.17 - Oryza sativa
           subsp. japonica (Rice)
          Length = 237

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 57  LPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVPLKIYIDLI 236
           L  PP   T  +  + +    + AR + +PE EAAA++      L PV S     Y+ ++
Sbjct: 82  LVPPPATTTASSTDQGESAAGATARSVVAPEEEAAAEEEEAATVLAPVPSPETPAYVKMV 141

Query: 237 LR 242
            R
Sbjct: 142 AR 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,516,729
Number of Sequences: 1657284
Number of extensions: 9416020
Number of successful extensions: 25699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25684
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)