Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    28   0.97 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   6.8  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.0  

>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 48  LEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVD 185
           +EDL + P ++ +R  +ERQ   R A   L  PET     +C  ++
Sbjct: 79  VEDLREKPAERELREQEERQKKLRLAPLNL-DPETAPKCFECDSIE 123


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 99  ERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVPLKIYIDLIL 239
           ER  P   +A    +P T   +     VD  +PV   P+K  ID +L
Sbjct: 352 ERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAYQPIKKPIDPML 398


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = -3

Query: 110 YLSFFMCSYSFLNWRIWK 57
           ++S+F C++ +  W++W+
Sbjct: 344 WMSWFSCNHFYPEWKVWE 361


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 495 NEVKTVKFMLIINTN*IVYRYF*NCFSLYRSMWEQIKYQFNYFLSFCFLY*KQPFYLSFL 316
           ++ +  KF+  +N+N  +  Y    F+  +  + Q  + ++Y  +F F Y  Q   L  L
Sbjct: 390 DQTRLQKFLRWLNSNPCLIPYRLQVFATAKVTFFQYLHDYSYIATFVFTYVFQALMLGSL 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,664
Number of Sequences: 5004
Number of extensions: 42648
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)