Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0533 + 15117535-15118248                                         32   0.33 
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    31   0.57 
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    29   4.0  
05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062     29   4.0  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    28   5.3  
01_01_0595 - 4430738-4430785,4430904-4432679                           28   7.0  

>05_03_0533 + 15117535-15118248
          Length = 237

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 57  LPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVPLKIYIDLI 236
           L  PP   T  +  + +    + AR + +PE EAAA++      L PV S     Y+ ++
Sbjct: 82  LVPPPATTTASSTDQGESAAGATARSVVAPEEEAAAEEEEAATVLAPVPSPETPAYVKMV 141

Query: 237 LR 242
            R
Sbjct: 142 AR 143


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +1

Query: 79  KLYEHIKNDKYLVGQRLVNY 138
           KL++ I++++YL+GQRL NY
Sbjct: 871 KLHDSIRDERYLIGQRLQNY 890


>06_03_0875 - 25584789-25585307,25585424-25585570,25585734-25585897,
            25586015-25586172,25586536-25586904,25586998-25587209,
            25587439-25588059,25588561-25588699,25588968-25589044,
            25589120-25589800,25590641-25590889
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 73   FRKLYEHIKNDKYLVGQRLVNY 138
            F  L+  I++D+YL+G+RL N+
Sbjct: 1038 FTNLHNSIRDDRYLIGRRLHNF 1059


>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
          Length = 456

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 51  EDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVR 203
           E LPD P+ +  R+  E  + GRS  R +   + EAA    R+     P+R
Sbjct: 199 EGLPDSPVDRVARSLGEALIGGRS--RAMIDDDEEAALWSRRNTPVEHPIR 247


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 33  VSSASLEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAA 164
           V S SLE+   P     I  H  R +PG  +  E RSP+ + A+
Sbjct: 338 VDSLSLEENKSPEGHDDIFNHL-RNIPGNDSCAECRSPDPDWAS 380


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 33  VSSASLEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVP 212
           V S S+ DLP     K +        P   A + L  P  EAAA     V    P +   
Sbjct: 5   VGSGSVRDLPPSKRFKYVGGSSLGMAPCLPARKRLCPPMLEAAAAAAAAVPVCLPAKK-- 62

Query: 213 LKIYIDLILRASV*SGVFSTILKSKLLSYFPP 308
            + Y      A+V  G F+  L +K  +Y PP
Sbjct: 63  -RAY---AAAAAVEGGGFALCLPAKKRAYAPP 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,490
Number of Sequences: 37544
Number of extensions: 241225
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)