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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)               30   1.3  
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)               28   5.4  
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +3

Query: 30  RVSSASLEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSV 209
           R SS+SL D+P PP+Q TI +   + VP   A        T  + ++     K   V + 
Sbjct: 159 RTSSSSLTDIPSPPLQTTI-SSPVQNVPNNLAT---TVAVTATSLKRTFDFAKTASVSAS 214

Query: 210 PL-KIYIDLILRASV*SGVFSTILKSKLLS 296
           P+   Y+  + +A V S   ST  ++K LS
Sbjct: 215 PVPSSYLQTVSKALVTSTENSTSKRTKSLS 244


>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
          Length = 749

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 30  RVSSASLEDLPDPPIQKTI 86
           R SS+SL D+P PP+Q TI
Sbjct: 159 RTSSSSLTDIPSPPLQTTI 177


>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
          Length = 645

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 437 LYTIQFVLIISINFTVFTSFSNLLSELF 520
           L T  F+L IS+   VF  FS L+ ELF
Sbjct: 547 LITWSFLLSISVTILVFLGFSALIVELF 574


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 158 SSTAVPSRRQTEACSLRASKNLYRSHSKGLCLERRFL--DDS 277
           S+TA+P  R    CS   S +L    ++ LC++RR +  DDS
Sbjct: 126 SATALPLSRVIVQCSSEYSHDLVADITRFLCMKRRVIREDDS 167


>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 469 HKFYRLHLVL*PSL*TILIQRKFYCHLNCQRSSS 570
           HK + L++   P+L T L+++K  CHL C +  S
Sbjct: 216 HKGFYLNV---PALITSLVKKKTACHLKCLKEKS 246


>SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 502 PSL*TILIQRKFYCHLNCQRSSS 570
           P+L T L+++K  CHL C +  S
Sbjct: 55  PALITSLVKKKTACHLKCMKEKS 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,041
Number of Sequences: 59808
Number of extensions: 286444
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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