BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0629 (631 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33 SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 30 1.3 SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 28 5.4 SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 >SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1626 Score = 32.3 bits (70), Expect = 0.33 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Frame = +3 Query: 30 RVSSASLEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSV 209 R SS+SL D+P PP+Q TI + + VP A T + ++ K V + Sbjct: 159 RTSSSSLTDIPSPPLQTTI-SSPVQNVPNNLAT---TVAVTATSLKRTFDFAKTASVSAS 214 Query: 210 PL-KIYIDLILRASV*SGVFSTILKSKLLS 296 P+ Y+ + +A V S ST ++K LS Sbjct: 215 PVPSSYLQTVSKALVTSTENSTSKRTKSLS 244 >SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) Length = 749 Score = 30.3 bits (65), Expect = 1.3 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 30 RVSSASLEDLPDPPIQKTI 86 R SS+SL D+P PP+Q TI Sbjct: 159 RTSSSSLTDIPSPPLQTTI 177 >SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) Length = 645 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 437 LYTIQFVLIISINFTVFTSFSNLLSELF 520 L T F+L IS+ VF FS L+ ELF Sbjct: 547 LITWSFLLSISVTILVFLGFSALIVELF 574 >SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1086 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +2 Query: 158 SSTAVPSRRQTEACSLRASKNLYRSHSKGLCLERRFL--DDS 277 S+TA+P R CS S +L ++ LC++RR + DDS Sbjct: 126 SATALPLSRVIVQCSSEYSHDLVADITRFLCMKRRVIREDDS 167 >SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 656 Score = 27.5 bits (58), Expect = 9.5 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 469 HKFYRLHLVL*PSL*TILIQRKFYCHLNCQRSSS 570 HK + L++ P+L T L+++K CHL C + S Sbjct: 216 HKGFYLNV---PALITSLVKKKTACHLKCLKEKS 246 >SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 634 Score = 27.5 bits (58), Expect = 9.5 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 502 PSL*TILIQRKFYCHLNCQRSSS 570 P+L T L+++K CHL C + S Sbjct: 55 PALITSLVKKKTACHLKCMKEKS 77 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,914,041 Number of Sequences: 59808 Number of extensions: 286444 Number of successful extensions: 631 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 630 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1572561250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -