Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    28   4.8  
S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.       28   4.8  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       28   4.8  
Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 155  SSSTAVPSRRQTEACSLRASKNLYRSHSKGLCLERRFLDDSEVETSL 295
            S+S+ +P   +TE+ S   +K   ++  K    E   L+D EVET +
Sbjct: 935  STSSTIPENIETESTSSEITKQTAKTSMKSSIPEAEGLEDDEVETDI 981


>Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical
           protein R53.3b protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  RTFQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHSSAVTST 186
           R+F I     L  H++N        L  ++H RQ+  H+S  TST
Sbjct: 258 RSFSISS--NLQRHVRNIHNKPNTSLTPHNHHRQRSLHNSTSTST 300


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  RTFQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHSSAVTST 186
           R+F I     L  H++N        L  ++H RQ+  H+S  TST
Sbjct: 479 RSFSISS--NLQRHVRNIHNKPNTSLTPHNHHRQRSLHNSTSTST 521


>S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  RTFQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHSSAVTST 186
           R+F I     L  H++N        L  ++H RQ+  H+S  TST
Sbjct: 258 RSFSISS--NLQRHVRNIHNKPNTSLTPHNHHRQRSLHNSTSTST 300


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  RTFQIRQFRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHSSAVTST 186
           R+F I     L  H++N        L  ++H RQ+  H+S  TST
Sbjct: 479 RSFSISS--NLQRHVRNIHNKPNTSLTPHNHHRQRSLHNSTSTST 521


>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 288 LLSYFPPFPLRTINKKVAFSKG--NKKIKNN*TDILFVPTSTCIMKSN 425
           L  Y+      T+ ++ AF K   +K  +N   DIL +   TC+ +SN
Sbjct: 28  LAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVTCLYRSN 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,219
Number of Sequences: 27780
Number of extensions: 227702
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)