Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0629
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49290.1 68416.m05387 expressed protein                             33   0.21 
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    31   0.48 
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    31   0.83 
At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At1g71050.1 68414.m08200 heavy-metal-associated domain-containin...    28   5.9  

>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
 Frame = +3

Query: 42  ASLEDLPDPPIQK-TIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVPLK 218
           A++ + P PP++K T ++   RQ P RSA     S  T    +Q +    + P R  PL 
Sbjct: 172 ATIRETPPPPVRKSTSQSSSPRQPPQRSATFSFTS--TIPKKEQDKR--SVSPHR-FPLL 226

Query: 219 IYIDLILRASV*SGVFSTILKSKLLS--YFPPFPLRTINKKVAFSKGNKK 362
               +  R S      +T  KS+ ++   +P  P R+ + +VAF K N+K
Sbjct: 227 RSGSVATRKSASISRPTTPSKSRSITPIRYPSEPRRSASVRVAFEKDNQK 276


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 1092

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 73   FRKLYEHIKNDKYLVGQRLVNYDHRRQKQQHSS 171
            FR L+  I++D+YL+G+RL N+       Q+ +
Sbjct: 1028 FRNLHNSIRDDRYLIGRRLHNFGEAALANQNQN 1060


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +3

Query: 42  ASLEDLPDPPIQKTIRTHKERQVPGRSAARELRSPETEAAAQQCRHVDKLKPVRSVPLKI 221
           A++ + P PP++K I     ++ P RSA     S  T    +Q +    + P R  PL  
Sbjct: 178 ATIRETPPPPVRKPILQSPSQRKPQRSATFSFSSIATAPKKEQDKRA--VSPHR-FPLLR 234

Query: 222 YIDLILRASV*SGVFSTILKSKLLS----YFPPFPLRTINKKVAFSKGNKK 362
              + +R S  S   +T  KS+ ++     +P  P R+ + +VAF K  +K
Sbjct: 235 SGSVAIRPSSISRP-TTPSKSRAVTPTPKRYPSEPRRSASVRVAFEKEAQK 284


>At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 504

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 179 RRQTEACSLRASKNLYRSHSKGLCLERRFLDDSEV-ETSLVLSSFP 313
           ++ ++  S  A++  Y++   GLC + +FL+ S+V E  L+ S FP
Sbjct: 393 KKMSKQVSCVANEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFP 438


>At1g71050.1 68414.m08200 heavy-metal-associated domain-containing
           protein / copper chaperone (CCH)-related low similarity
           to copper homeostasis factor [GI:3168840][PMID:9701579];
           similar to farnesylated protein ATFP7 [GI:4097555];
           contains heavy-metal-associated domain PF00403
          Length = 152

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 588 RFSATRRRRPLAVKVTIKFSLY*NSSERRLENEVKTVKFMLIINTN 451
           R +  RR+R +   V IK  +  +  ERR++N V ++K +  +  N
Sbjct: 16  RVTRKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEVN 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,155
Number of Sequences: 28952
Number of extensions: 201142
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)