Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0628
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   5.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.7  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 454 PNDYNRHLI 428
           PN YNRHL+
Sbjct: 509 PNTYNRHLV 517


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 403 LYLMHWPIGLNADYSHSDVDFMETWRGLE 489
           LYL H   G   DY H  +     +R L+
Sbjct: 331 LYLKHEQQGAAPDYRHWQIPLGRRFRALK 359


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 353 ATSVLRCWVFHSL 315
           AT++LR W+F  L
Sbjct: 189 ATNILRAWLFQHL 201


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 353 ATSVLRCWVFHSL 315
           AT++LR W+F  L
Sbjct: 345 ATNILRAWLFQHL 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,852
Number of Sequences: 336
Number of extensions: 2658
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)