Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0627
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical pr... 54 5e-08
Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical pr... 54 5e-08
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 29 2.2
Z73976-5|CAA98282.1| 283|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 27 9.1
AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacti... 27 9.1
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 27 9.1
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 27 9.1
>Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 54.4 bits (125), Expect = 5e-08
Identities = 35/101 (34%), Positives = 48/101 (47%)
Frame = +3
Query: 252 RLDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 431
++D EGVI P++ + MGD A AFS +D A+ +TAA
Sbjct: 83 KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141
Query: 432 IQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHALELNCDS 554
I+ NP SA+L AKR + K I DC A+ +N DS
Sbjct: 142 IEANPGSAMLHAKRANVLLKLKRPVAAIADCDKAISINPDS 182
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 37 LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 141
LK FV +C+ P +LH P+ FFKDYL+SLG +LP
Sbjct: 7 LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41
>Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 54.4 bits (125), Expect = 5e-08
Identities = 35/101 (34%), Positives = 48/101 (47%)
Frame = +3
Query: 252 RLDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 431
++D EGVI P++ + MGD A AFS +D A+ +TAA
Sbjct: 83 KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141
Query: 432 IQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHALELNCDS 554
I+ NP SA+L AKR + K I DC A+ +N DS
Sbjct: 142 IEANPGSAMLHAKRANVLLKLKRPVAAIADCDKAISINPDS 182
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 37 LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 141
LK FV +C+ P +LH P+ FFKDYL+SLG +LP
Sbjct: 7 LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 197 MKKKWNRHLTRNRSLNQM 250
MKK ++RHLT NRS N++
Sbjct: 788 MKKTFSRHLTENRSANEL 805
>Z73976-5|CAA98282.1| 283|Caenorhabditis elegans Hypothetical
protein T07C12.9 protein.
Length = 283
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 63 NTAATITPSTIGVF*GLSDISWCIIADRYFWC 158
NTA + P ++ G+ + +WC R F C
Sbjct: 208 NTAGAVKPGGYLIYGGIFEETWCSFGGRKFTC 239
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 286 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 375
++ NLK + Q R+ ++KEM +++S L++
Sbjct: 169 RELNLKRTLAQKRKRQREKEMEELESILRE 198
>AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacting
protein protein4, isoform c protein.
Length = 542
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 286 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 375
++ NLK + Q R+ ++KEM +++S L++
Sbjct: 169 RELNLKRTLAQKRKRQREKEMEELESILRE 198
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 286 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 375
++ NLK + Q R+ ++KEM +++S L++
Sbjct: 165 RELNLKRTLAQKRKRQREKEMEELESILRE 194
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 286 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 375
++ NLK + Q R+ ++KEM +++S L++
Sbjct: 146 RELNLKRTLAQKRKRQREKEMEELESILRE 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,862
Number of Sequences: 27780
Number of extensions: 207071
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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