Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0625
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    56   4e-09
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    28   1.0  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   7.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.4  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   9.4  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   9.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 235
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 236 GVTIAG 253
           G+ +AG
Sbjct: 61  GIILAG 66



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 297 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 434
           +L K G+ C+ T+  +++S Y E   P +AA + E L +YL+  GY
Sbjct: 82  KLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 285 YHPRELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 410
           +HP + G  G+ C+K   A +   YE+PI  + +  +    G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 276 ATEVDVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 103
           A E+ V    I T PL    + SKP   F  SS     P     + PS P     V+H
Sbjct: 116 AGELSVQFKFIPTDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPSKPRKKVPVSH 173


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 141 MCGQSRKASKFQKMKWRR 194
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 218 SLLTSGGVTIAGSGTSTSVAQTISSAR----TWQGRRALHEDT 334
           S+ TS  V I+   +S S   TI+SA     TW    AL +DT
Sbjct: 213 SMNTSSNVKISSDPSSPSTQTTINSAAKSSFTWLDGNALLQDT 255


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 649  DGERIKGVQNPQNNHMCTLTHHTDYAAIIYRISKQ*TVLLSLYRIYKCSYLF 494
            DG+  K +    +  + T  +  + +A IYR++++     +L RI    YLF
Sbjct: 1580 DGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLF 1631


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 340 ACCVFMQCTPTLPSSRG*YGLC 275
           A  +  QC+PT+ ++ G YG C
Sbjct: 240 ASTILGQCSPTVATAAGEYGRC 261


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 258 PLPAIVTPPLVSSDSFSKPATIFATSSFEISKPS 157
           P+PA       +S+S + P TI A+++  IS+P+
Sbjct: 330 PVPASAAERAPTSESTTVPETIVASTTKVISEPA 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,814
Number of Sequences: 5004
Number of extensions: 56571
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)