Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0625
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 54 1e-07
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 53 2e-07
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 53 2e-07
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 42 4e-04
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 30 1.8
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 29 3.2
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 3.2
07_03_1000 - 23220878-23221821,23222164-23223001 27 9.7
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 27 9.7
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +2
Query: 59 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 226
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 227 TSGGVTIAGS 256
G+ + G+
Sbjct: 61 APTGLFLGGT 70
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 303 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 431
G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI G
Sbjct: 88 GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 59 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 226
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 227 TSGGV 241
G+
Sbjct: 61 APTGL 65
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 303 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 431
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 59 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 226
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 227 TSGGV 241
G+
Sbjct: 61 APTGL 65
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 303 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 431
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 152 KSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGSGTSTSVAQTISSARTWQGRR 316
K+ GF+I DE+ IV G +++ L+T GGVT +TS A +S+A RR
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVTGIADKLATSPADGLSTAEESIKRR 146
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 212 NESLLTSGGVTIAGSGTSTSVAQTISSARTWQG 310
++S +SG V+ +GSG+S S A + SS+ +W G
Sbjct: 339 SDSGSSSGSVSASGSGSSNSGAGSGSSSSSWSG 371
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 279 CATEVDVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTHL 100
C +VPL ++P + S+ + KP I ATS + + F + S P + ++ THL
Sbjct: 88 CPLYQNVPLSLALSPRIFSAVAKFKPDIIHATSPGVMVFGARFIAKMLSVPMVMSYHTHL 147
Query: 99 DA 94
A
Sbjct: 148 PA 149
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -2
Query: 264 DVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 112
D+ + P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 111 DMDFDTMSEPSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 264 DVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFV 109
D PLP V P S + +SSF + PS AH L + AA +
Sbjct: 28 DAPLPVNVWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNAHLLSAARRYAALL 79
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 230 SGGVTIAGSGTSTSVAQTISSARTWQGRRALHEDTA 337
+GG G + V Q SSA T GRR+ H +TA
Sbjct: 109 NGGAFPGGLSSGRGVWQHSSSAATALGRRSQHSNTA 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,584
Number of Sequences: 37544
Number of extensions: 385246
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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