Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0623
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    29   0.70 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.8  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   6.6  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 651 SCKPLYFLRSLPKYPVLPPIKKITDVKTHLFT 746
           SC P      L  +   P +KK+ D K H+FT
Sbjct: 235 SCLPSALQSQLQSFNYPPSLKKLNDAKAHVFT 266


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 82  LRNYAKKQRQLVSVVQNLKRAHFAVNCKLMIVFYNQKN*DYQRCF*SMSSKYLIN-LSIH 258
           L N  KK+RQ+++ + + KR      C L ++  NQ     +      S++ ++N L IH
Sbjct: 330 LSNPLKKERQIITFMGDFKRCVVESLCFLFLLLTNQPRFTDELVNFKSSNEMMMNLLFIH 389

Query: 259 LK 264
           +K
Sbjct: 390 VK 391


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 399 CGITNYV*EMYIYILDIYFSKQILE*KIL---WLF 304
           CGIT+   +  +YI+D+++  Q LE  IL   WLF
Sbjct: 645 CGITSQKIKSSLYIIDLHYPSQQLE-SILSFEWLF 678


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 220 IKNIFGNLNSFDCRKLSLT 164
           + N FG LNSFD RK S T
Sbjct: 268 LPNCFGKLNSFDLRKGSST 286


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 235 IWNSLIKNIFGNLNSFDCRKLSL 167
           +WN L++ +F      +C+KL +
Sbjct: 202 VWNDLVRRVFAVQQLINCKKLEI 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,597
Number of Sequences: 5004
Number of extensions: 60716
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)