Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0622
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    29   4.3  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    29   4.3  
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    28   7.5  

>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 325 CIFFVRNNELLTIKTCN-YIHFLYYYSS 245
           CI F   NE+L IK C  Y+H L  +SS
Sbjct: 55  CIIFKTPNEMLPIKWCMLYLHLLATFSS 82


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 456 KLDNTLTSRLREYHWAIAKHVVYLECLLSIIRGK 557
           +L NT+ S      +    H ++L CL++++RGK
Sbjct: 134 RLINTMASYTSGRSYFTVHHKIFLPCLIAVLRGK 167


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 456 KLDNTLTSRLREYHWAIAKHVVYLECLLSIIRGK 557
           +L NT+ S      +    H ++L CL++++RGK
Sbjct: 134 RLINTMASYTSGRSYFTVHHKIFLPCLIAVLRGK 167


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
           protein 5 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  CLSTDDSFFF*TELFSFDVRINNVTN 168
           C  T+D  F   E+FSFDV  NN+ N
Sbjct: 225 CKKTNDPEF--NEMFSFDVSFNNLAN 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,573
Number of Sequences: 27780
Number of extensions: 313167
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)