Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0621
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 253 2e-68
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 120 2e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 118 7e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 116 2e-27
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 29 0.43
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.3
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 3.0
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.0
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 26 4.0
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 25 6.9
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 6.9
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 9.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 253 bits (619), Expect = 2e-68
Identities = 121/195 (62%), Positives = 141/195 (72%)
Frame = +2
Query: 50 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 229
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 230 APRHHRRLEPGTMDSVRSGTLGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELVDSVLDVV 409
LEPGTMD+V+SG G +FRPDN ++GQSGAGN WAKG YTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 410 RKEAESCDCXQGLXSDTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVPSPKVSDTVX 589
R+EAE+CD QG G KIREEYPDR+M T+SV P+PK SDTV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 590 EXYNATLSVHXLXEN 634
E YNATLS+H L EN
Sbjct: 181 EPYNATLSMHQLVEN 195
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 120 bits (288), Expect = 2e-28
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 2/192 (1%)
Frame = +2
Query: 50 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGQ 223
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E G+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 224 VRAPRHHRRLEPGTMDSVRSGTLGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELVDSVLD 403
+ LEP +D VR+G +F P+ + G+ A NN+A+G YT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 404 VVRKEAESCDCXQGLXSDTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVPSPKVSDT 583
+R+ A++C QG +G ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 584 VXEXYNATLSVH 619
V E YN+ L+ H
Sbjct: 181 VVEPYNSVLTTH 192
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 118 bits (284), Expect = 7e-28
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 3/197 (1%)
Frame = +2
Query: 53 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 232
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 233 PRHHRRLEPGTMDSVRSGTLGQIFRPDNFVFGQS--GAGNNWAKGXYTEGAELVDSVLDV 406
LEP ++++ S T G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 407 VRKEAESCDCXQGLXSDTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVP-SPKVSDT 583
+ +EA+ D +G G ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 584 VXEXYNATLSVHXLXEN 634
V + YN+ L++ L N
Sbjct: 182 VVQPYNSLLALKRLTLN 198
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 116 bits (280), Expect = 2e-27
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 8/203 (3%)
Frame = +2
Query: 50 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG---- 217
MRE++ + GQ G QIG WE+ EHGI P G +S++ + N Y N+ G
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLNDGFGTFFS 58
Query: 218 --GQVR-APRH-HRRLEPGTMDSVRSGTLGQIFRPDNFVFGQSGAGNNWAKGXYTEGAEL 385
GQ + PR + LEP +D VR+G +F P+ V G+ A NN+A+G YT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 386 VDSVLDVVRKEAESCDCXQGLXSDTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVPS 565
+DSVL+ +R+ A++C QG G ++ EY + +SV P+
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 566 PKVSDTVXEXYNATLSVHXLXEN 634
P+VS +V E YN+ L+ H +N
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDN 201
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 221 QVRAPRHHRRLEPGTMDSVRSGTLGQIFRPDNFVFGQSGAGN 346
+V AP+H RR GT RS +FR ++ FGQ GN
Sbjct: 487 EVFAPKHARR-RLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 89 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 190
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 305 RPDNFVFGQSGAGNNWAKGXYTEGAELVDSVLDVVRKEAESCDC 436
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 426 DSASFRTTSKTESTSSAPSVXCPLAQLLPAPDCPKTKLSGRKICPK 289
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPSKSILLR---PPPSIASSPESKRRKCPK 432
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 464 ARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVP---SPKVSDTVXEXY 598
+R RH Y PHL++R+ D+ + + SP + D + + Y
Sbjct: 68 SRERHGSNYVIEPHLELRDMAKDKTLENFLAQMDDYSPLIPDVLLDYY 115
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 380 ELVDSVLDVVRKEAESCDCXQGLXSDTLARRRH 478
E+V+S D + K+A++CD + D + H
Sbjct: 59 EMVESSSDEILKDADNCDVAMLVVGDPMGATTH 91
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 185 RINVYYNEASGGQVRAPRHHRRLEPGTMDSVRSGTLGQIFRPDNFVFGQSGAGNNWAKGX 364
R ++ + AS + P+H RR + S + G F+P + + K
Sbjct: 581 RADLSQSPASYDSLNVPKHRRRQSLFSPSSTKKKLSGSPFQPKRSFLRRLFSSEPSCKCV 640
Query: 365 YTE--GAELVDSVLDVVRK 415
Y +EL +L+V+R+
Sbjct: 641 YASLVASELEHEILEVLRR 659
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -3
Query: 391 IDELSTLRVXSLGPVVAGAGLSEDEVVRTEDLS*SSRADRVHGAGLKSTMMARG 230
++++S V +G G G++ D R ++ + D KST MA G
Sbjct: 62 VEDISKFDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHG 115
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 447 NPWXQSHDSASFRTTSKT----ESTSSAPSVXCPLAQLLPAPDCPKTKLSG 307
+P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 356 SPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,983
Number of Sequences: 5004
Number of extensions: 39629
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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