Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0621
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.066
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 386 VDSVLDVVRKEAESCDCXQGLXS---DTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSV 556
           +DS+++++R   ++CD   G+ +   D L          H P + I +   D+I+  Y +
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDTGVDDILGNN----TVIHQPRIIIIDLKTDKILRIYPL 161

Query: 557 VPSPKVSDT 583
             S + SD+
Sbjct: 162 KSSDQTSDS 170


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 115 LPELSSDLVAALTSLDMYDFPHFVLFM 35
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 232 GTYLXAGGFIVVY 194
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 LERINVYYNEASGGQVRAPRHHRRL 253
           L R+N    +  GGQ++  +H +RL
Sbjct: 266 LIRMNKLCIQTIGGQIKPRKHEQRL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,412
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)