Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0620
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   143   2e-35
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.3  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   2.3  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   9.4  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  143 bits (346), Expect = 2e-35
 Identities = 62/84 (73%), Positives = 76/84 (90%)
 Frame = +2

Query: 257 FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAI 436
           +FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAI
Sbjct: 70  YFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAI 128

Query: 437 ILAKLSVLPVRRGYWGNKIGKXHT 508
           I+ KLS++P+RRGYWG  +G  HT
Sbjct: 129 IMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIV 68


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 188  RKNRQTREHLLVFFTNQRIRDHYFFLG 268
            RK     EH+LVFF N ++ D+Y ++G
Sbjct: 2149 RKRLFAAEHMLVFFQNCKL-DYYRYVG 2174


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 227 FTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAF 352
           F  QRI + Y      +N  + K   +Q+  RAG+  R K F
Sbjct: 322 FNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGKVF 363


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 271 RAEEEIMISNSLIGKENK*MLSSLSIFPSRTR 176
           R+EE+I ++NSL+ K N   +  LSI   R +
Sbjct: 225 RSEEQIQLANSLLQKLNACKILFLSIKKRRIK 256


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 215 LLVFFTNQRIR-DHYFFLGPSLNDEVLKIMP 304
           LL FF  + ++ DH  +LGPS+ +   + +P
Sbjct: 65  LLKFFAAEGLKQDHVIWLGPSIGEMWFRQLP 95


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 421 GSGDFLAALHTQTNMTVVVANGNKCLETCA 332
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 255 ISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 350
           I S+     +++L S   R KH+P+   ++RH
Sbjct: 353 IRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 287 PHHSGTGRGRNNDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 144
           PHH  TG  +      +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 372 PHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,011
Number of Sequences: 5004
Number of extensions: 40005
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)