Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0620
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      154   5e-38
07_01_0756 + 5819367-5820038,5820847-5821005                          151   3e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     41   5e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   2.4  
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    27   9.5  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  154 bits (373), Expect = 5e-38
 Identities = 71/98 (72%), Positives = 83/98 (84%), Gaps = 2/98 (2%)
 Frame = +2

Query: 221 VFFTNQRIRDHYFF--LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGV 394
           ++  +  +++H     L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGV
Sbjct: 65  IYLHSLPVKEHQIVETLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGV 124

Query: 395 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKXHT 508
           KC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+ HT
Sbjct: 125 KCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 24/41 (58%), Positives = 36/41 (87%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I+
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  151 bits (366), Expect = 3e-37
 Identities = 70/98 (71%), Positives = 82/98 (83%), Gaps = 2/98 (2%)
 Frame = +2

Query: 221 VFFTNQRIRDHYFF--LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGV 394
           ++  +  +++H     L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGV
Sbjct: 68  IYLHSLPVKEHQIVEQLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGV 127

Query: 395 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKXHT 508
           KC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGK HT
Sbjct: 128 KCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/41 (60%), Positives = 36/41 (87%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I+
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIV 81


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +2

Query: 278 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 457
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 458 LPV 466
           + V
Sbjct: 231 VTV 233


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 350 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 445
           FV +GD + HI LGVKC+K  AT + GAIILA
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 412 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 296
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 289 NLIIQGRAEEEIMISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSFWSS 134
           N +I  RAE ++ +S+S+IG+E+        +    +   S++ G H F +S
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTS 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,029
Number of Sequences: 37544
Number of extensions: 290197
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)