Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0620
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   142   1e-34
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    28   4.8  
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    27   6.4  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   8.5  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   8.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  142 bits (344), Expect = 1e-34
 Identities = 66/79 (83%), Positives = 72/79 (91%)
 Frame = +2

Query: 272 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 451
           +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 452 SVLPVRRGYWGNKIGKXHT 508
           +V+PVRRGYWGNKIG  HT
Sbjct: 157 AVVPVRRGYWGNKIGLPHT 175



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = +3

Query: 135 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEII
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEII 91


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 355 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEEIMISNSLIGKEN 221
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 355 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEEIMISNSLIGKEN 221
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 185 RRKNRQTREHLLVFFTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 361
           R++ R T ++  +  T +RIR   F +  S    +L  +PV+K+    +  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 362 GDN 370
            DN
Sbjct: 84  LDN 86


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 180 VREGKIDKLESIYLFSLPIKEFEIIISSSARP*MMRFLRSCLYRNKHV 323
           ++EG  DK++   +F   I  F++  S  +R  ++ FL S ++ +K V
Sbjct: 170 IQEGDNDKMDFEQVFETLISIFKLHASEYSRVVILNFLNSPVFESKKV 217


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 304 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 432
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 304 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 432
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,234,060
Number of Sequences: 27780
Number of extensions: 238287
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)