Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0619
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    31   0.24 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   6.9  

>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = +3

Query: 306 ETLSLKFSSATGGSLSEDNLRFLAEKIFRTSLPLNTMELNAMAVSW---TQFCKDALPER 476
           E++S++++      + +  +RF+ +    ++ P    E+ A  ++W      C + LPE 
Sbjct: 136 ESVSVEYAKEILSHMEKLEIRFMPDYRHMSAQPYYVTEMRASVINWIVGVHTCINLLPES 195

Query: 477 NF---TFWEWFYMVSRSPGTTCGPCGATA 554
            F      + F  +   P +    CGATA
Sbjct: 196 LFLSINVLDRFLSLQNVPASKMKLCGATA 224


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 755 SNTRSASERSMRSRDVKAAAEYFVAVSGPSDGDPSQLGVRRTAAGRSRADTWTAYPQLAS 576
           ++ +S+  R   S D       F ++S  SDG+ S   +   ++  S ++  TA+   +S
Sbjct: 725 TSMQSSVSRPQSSGDASGFNTIFTSISQSSDGETSGYTISSNSSQNSASEPQTAFTSSSS 784

Query: 575 S 573
           S
Sbjct: 785 S 785


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 31  RNMQLRKIKRAEKKGTESVMDEKLTLLFQ--SQFNVGGG-ELVFQVWTLSLPVVVIVHGN 201
           R + L  ++  E+K      D   T++F    QF   G  + V ++WT S  +V  +HG+
Sbjct: 398 RTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGH 457

Query: 202 QE 207
           +E
Sbjct: 458 EE 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,324
Number of Sequences: 5004
Number of extensions: 52445
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)