Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0619
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal transd...    47   1e-05
AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical...    47   1e-05
AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical...    47   1e-05
AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical...    47   1e-05
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    39   0.003
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    39   0.003
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    31   0.69 
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    31   0.69 
AC087081-10|AAK66035.1|  326|Caenorhabditis elegans Hypothetical...    30   1.6  
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal
           transducer and activatorof transcription STA-1 protein.
          Length = 703

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 79  ESVMDEKLTLLFQ-SQFNVGG--GELVFQVWTLSLPVVVIVHGNQEPHGWATVTWDNAFS 249
           ++  D+K  LLF  + F +G    E  F VWTLSLP++V VHG+Q+      + W  AF+
Sbjct: 317 QAATDQKYALLFFITPFQMGNLSKEEQFDVWTLSLPIMVTVHGSQDCDAQVAILWHRAFA 376



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +3

Query: 285 VTWGQLAETLSLKFSSATGGS--LSEDNLRFLAEKIFRTSLPLNTMELNAMAVSWTQFCK 458
           VTW  LA  L  KFS  TG    LS+ +L +L+EK+   ++       +   +++ +F K
Sbjct: 390 VTWDNLAIMLRNKFSLFTGARRPLSDSDLAYLSEKMLMPNVA------DQKPITFHRFAK 443

Query: 459 DAL-PERNFTFWEWFYMV 509
            A+  +  F+FWEWF+ +
Sbjct: 444 QAMRDDLPFSFWEWFFSI 461



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++ +  L   W +   +GFI K  A   +  C   +FLLRF
Sbjct: 463 QLIKQKLLKFWDEGWCIGFISKNDASQSMMMCQHSSFLLRF 503


>AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17c protein.
          Length = 703

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 79  ESVMDEKLTLLFQ-SQFNVGG--GELVFQVWTLSLPVVVIVHGNQEPHGWATVTWDNAFS 249
           ++  D+K  LLF  + F +G    E  F VWTLSLP++V VHG+Q+      + W  AF+
Sbjct: 317 QAATDQKYALLFFITPFQMGNLSKEEQFDVWTLSLPIMVTVHGSQDCDAQVAILWHRAFA 376



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +3

Query: 285 VTWGQLAETLSLKFSSATGGS--LSEDNLRFLAEKIFRTSLPLNTMELNAMAVSWTQFCK 458
           VTW  LA  L  KFS  TG    LS+ +L +L+EK+   ++       +   +++ +F K
Sbjct: 390 VTWDNLAIMLRNKFSLFTGARRPLSDSDLAYLSEKMLMPNVA------DQKPITFHRFAK 443

Query: 459 DAL-PERNFTFWEWFYMV 509
            A+  +  F+FWEWF+ +
Sbjct: 444 QAMRDDLPFSFWEWFFSI 461



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++ +  L   W +   +GFI K  A   +  C   +FLLRF
Sbjct: 463 QLIKQKLLKFWDEGWCIGFISKNDASQSMMMCQHSSFLLRF 503


>AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17b protein.
          Length = 567

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 79  ESVMDEKLTLLFQ-SQFNVGG--GELVFQVWTLSLPVVVIVHGNQEPHGWATVTWDNAFS 249
           ++  D+K  LLF  + F +G    E  F VWTLSLP++V VHG+Q+      + W  AF+
Sbjct: 317 QAATDQKYALLFFITPFQMGNLSKEEQFDVWTLSLPIMVTVHGSQDCDAQVAILWHRAFA 376



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +3

Query: 285 VTWGQLAETLSLKFSSATGGS--LSEDNLRFLAEKIFRTSLPLNTMELNAMAVSWTQFCK 458
           VTW  LA  L  KFS  TG    LS+ +L +L+EK+   ++       +   +++ +F K
Sbjct: 390 VTWDNLAIMLRNKFSLFTGARRPLSDSDLAYLSEKMLMPNVA------DQKPITFHRFAK 443

Query: 459 DAL-PERNFTFWEWFYMV 509
            A+  +  F+FWEWF+ +
Sbjct: 444 QAMRDDLPFSFWEWFFSI 461



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++ +  L   W +   +GFI K  A   +  C   +FLLRF
Sbjct: 463 QLIKQKLLKFWDEGWCIGFISKNDASQSMMMCQHSSFLLRF 503


>AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17a protein.
          Length = 706

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 79  ESVMDEKLTLLFQ-SQFNVGG--GELVFQVWTLSLPVVVIVHGNQEPHGWATVTWDNAFS 249
           ++  D+K  LLF  + F +G    E  F VWTLSLP++V VHG+Q+      + W  AF+
Sbjct: 317 QAATDQKYALLFFITPFQMGNLSKEEQFDVWTLSLPIMVTVHGSQDCDAQVAILWHRAFA 376



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +3

Query: 285 VTWGQLAETLSLKFSSATGGS--LSEDNLRFLAEKIFRTSLPLNTMELNAMAVSWTQFCK 458
           VTW  LA  L  KFS  TG    LS+ +L +L+EK+   ++       +   +++ +F K
Sbjct: 390 VTWDNLAIMLRNKFSLFTGARRPLSDSDLAYLSEKMLMPNVA------DQKPITFHRFAK 443

Query: 459 DAL-PERNFTFWEWFYMV 509
            A+  +  F+FWEWF+ +
Sbjct: 444 QAMRDDLPFSFWEWFFSI 461



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++ +  L   W +   +GFI K  A   +  C   +FLLRF
Sbjct: 463 QLIKQKLLKFWDEGWCIGFISKNDASQSMMMCQHSSFLLRF 503


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++T  YL ++W D L+ GF  K+ AE++L   P    L+RF
Sbjct: 525 EITNKYLYSMWYDGLVYGFCSKEDAENILRCIPRSVLLVRF 565


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++T  YL ++W D L+ GF  K+ AE++L   P    L+RF
Sbjct: 525 EITNKYLYSMWYDGLVYGFCSKEDAENILRCIPRSVLLVRF 565


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 512 KVTRDYLRTLWCDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++T  YL ++W D L+ GF  K+ AE++L   P    L+RF
Sbjct: 571 EITNKYLYSMWYDGLVYGFCSKEDAENILRCIPRSVLLVRF 611


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 159 LDPVASGCGHSPRQPGAPRVGHRHVGQRLQSPGRVPFAVPDKVTWGQLAETLSLKFSSAT 338
           +D V +G GH+   P  PR  + H    +  P    F++ DK+    +A+T+ +   + +
Sbjct: 133 VDAVWAGWGHASENPDLPRRLNDHNIAFIGPPASAMFSLGDKIASTIIAQTVGVPTVAWS 192

Query: 339 GGSLSEDNL 365
           G  ++ +++
Sbjct: 193 GSGITMESI 201


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 159 LDPVASGCGHSPRQPGAPRVGHRHVGQRLQSPGRVPFAVPDKVTWGQLAETLSLKFSSAT 338
           +D V +G GH+   P  PR  + H    +  P    F++ DK+    +A+T+ +   + +
Sbjct: 133 VDAVWAGWGHASENPDLPRRLNDHNIAFIGPPASAMFSLGDKIASTIIAQTVGVPTVAWS 192

Query: 339 GGSLSEDNL 365
           G  ++ +++
Sbjct: 193 GSGITMESI 201


>AC087081-10|AAK66035.1|  326|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.8 protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 496 HSQNVKFLSGSASLQNWVQLTAIAFSSMVFSGRLVLNIFSAKNLRLSSERDPPVAELNLR 317
           H+  +K +   + L+ W Q   ++FS+  F   L+ N F  +   +  E  P  + + +R
Sbjct: 200 HATKIK-IEMISHLEQWKQAKIVSFSNFTFGSHLIENFFHFERFTIKMEDFPLESAIKIR 258


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 518 TRDYLRTLWCDRLIMGFIQKKQAEDMLSK 604
           TR+ +R LW    +MGF++ ++ ++ML K
Sbjct: 597 TRNNVRKLWEMGFLMGFMEFEEVDNMLEK 625


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 518 TRDYLRTLWCDRLIMGFIQKKQAEDMLSK 604
           TR+ +R LW    +MGF++ ++ ++ML K
Sbjct: 597 TRNNVRKLWEMGFLMGFMEFEEVDNMLEK 625


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 518 TRDYLRTLWCDRLIMGFIQKKQAEDMLSK 604
           TR+ +R LW    +MGF++ ++ ++ML K
Sbjct: 597 TRNNVRKLWEMGFLMGFMEFEEVDNMLEK 625


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 447  QFCKDALPERNFTFW-EWFYMVSRSPGTTCGPCG 545
            Q+C+D  PE     W EW  +       TCG CG
Sbjct: 1274 QYCQDNTPEVCTGTWTEWATLEGAVCNDTCGNCG 1307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,581
Number of Sequences: 27780
Number of extensions: 340007
Number of successful extensions: 1246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)