Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0619
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78540.1 68414.m09154 transcription factor-related weak simil...    34   0.12 
At1g17040.1 68414.m02071 transcription factor-related contains P...    34   0.12 
At1g50520.1 68414.m05667 cytochrome P450 family protein similar ...    31   1.1  
At1g26750.1 68414.m03257 expressed protein                             31   1.1  
At1g50560.1 68414.m05673 cytochrome P450, putative similar to CY...    30   1.5  
At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    29   3.4  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    28   7.9  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    28   7.9  

>At1g78540.1 68414.m09154 transcription factor-related weak
           similarity to STAT protein (GI:2230824) and STATc
           protein (GI:13235235) [Dictyostelium discoideum]
          Length = 638

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 515 VTRDYLRTLW---CDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           ++R  +  +W     + I GFI K++AE  L    PGTF+LRF
Sbjct: 559 ISRGLINGMWRSSSPKWIEGFITKEEAEHSLQGQEPGTFILRF 601


>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
           profile: PF00017 Src homology domain 2; similar to
           transcription factor [Danio rerio] (GI:3687402)
          Length = 641

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 515 VTRDYLRTLW---CDRLIMGFIQKKQAEDMLSKCPPGTFLLRF 634
           V+R  +  +W     + I GF+ K++AE  L    PGTF+LRF
Sbjct: 531 VSRGLINGMWRSASPKWIEGFVTKEEAERSLQNQVPGTFILRF 573


>At1g50520.1 68414.m05667 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3 GB:O81973 from [Glycine max]
          Length = 533

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 DPVASGCGHSPRQPGAPRVGHRHV 233
           DP   GCG  P  P  P +GH H+
Sbjct: 35  DPQLQGCGLPPSPPSLPVIGHLHL 58


>At1g26750.1 68414.m03257 expressed protein
          Length = 195

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 192 PRQPGAPRVGHRHVGQRLQSPGRVPFAVPDKV-TWGQLAETLSLK-FSSATGGSLSEDNL 365
           P  P   +  ++H G ++  P ++   +PD+   +G     L LK    + G ++S  N+
Sbjct: 51  PEDPYVRKFANKHPGTKIDDPAKISAFIPDQARVYG--CRVLELKEHGISEGDAMSVANM 108

Query: 366 RFLAEK 383
            +L+E+
Sbjct: 109 EYLSER 114


>At1g50560.1 68414.m05673 cytochrome P450, putative similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 519

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 162 DPVASGCGHSPRQPGAPRVGHRH 230
           DP   GCG  P  P  P +GH H
Sbjct: 35  DPQLQGCGLPPSPPSLPIIGHLH 57


>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +2

Query: 527 YLRTLWCDRLIMGFIQKKQAEDMLSK 604
           +LR   C++ + GF+QKK+++++L K
Sbjct: 292 FLRWKQCEQQVSGFVQKKKSQNVLRK 317


>At1g58050.1 68414.m06579 helicase domain-containing protein contains
            similarity to SP|P24785 Dosage compensation regulator
            (Male-less protein) (No action potential protein)
            {Drosophila melanogaster}; contains Pfam profiles
            PF04408: Helicase associated domain (HA2), PF00271:
            Helicase conserved C-terminal domain
          Length = 1417

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 493  SQNVKFLSGSASLQNWVQLTAIAFSSMVFSG-RLVLN 386
            S NV   SGS ++  W++LTA A ++++F   RL L+
Sbjct: 1344 SINVHHQSGSVTIDGWLKLTAPAQTAVLFKELRLTLH 1380


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 406 SGRLVLNIFSAKNLRLSSERDPPVAELNLRLRVSASW 296
           +G  V  ++ ++NL LSS +  P    NL+ R   SW
Sbjct: 372 NGAAVCVLYGSENLELSSHKSGPTVTFNLK-RPDGSW 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,326
Number of Sequences: 28952
Number of extensions: 322251
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)