Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0618
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   4.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 723 ASETDRSTQNNEQGDTEIIPSDLDPYAP 640
           A+ET +  Q+N    + +  S  DPY+P
Sbjct: 119 AAETQQQQQHNNGYASPMSTSSYDPYSP 146


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 510 KSCE*KIK*LLAGNYRLGRMKNINTNTY 593
           +S E KI   L+ NY+     N N N Y
Sbjct: 75  RSKEPKIISSLSNNYKYSNYNNYNNNNY 102



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 549 NYRLGRMKNINTNTYIKIQTYH 614
           NY      N N N Y K+Q Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 510 KSCE*KIK*LLAGNYRLGRMKNINTNTY 593
           +S E KI   L+ NY+     N N N Y
Sbjct: 75  RSKEPKIISSLSNNYKYSNYNNYNNNNY 102



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 549 NYRLGRMKNINTNTYIKIQTYH 614
           NY      N N N Y K+Q Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 510 KSCE*KIK*LLAGNYRLGRMKNINTNTY 593
           +S E KI   L+ NY+     N N N Y
Sbjct: 75  RSKEPKIISSLSNNYKYSNYNNYNNNNY 102



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 549 NYRLGRMKNINTNTYIKIQTYH 614
           NY      N N N Y K+Q Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 510 KSCE*KIK*LLAGNYRLGRMKNINTNTY 593
           +S E KI   L+ NY+     N N N Y
Sbjct: 75  RSKEPKIISSLSNNYKYSNYNNYNNNNY 102



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 549 NYRLGRMKNINTNTYIKIQTYH 614
           NY      N N N Y K+Q Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYN 114


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 92  YPNHYLSDVYQHIT*VMIRVYRYN 21
           Y N+Y SD+ Q    + + + RYN
Sbjct: 61  YKNNYPSDIDQWHDKIFVTMLRYN 84


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 92  YPNHYLSDVYQHIT*VMIRVYRYN 21
           Y N+Y SD+ Q    + + + RYN
Sbjct: 61  YKNNYPSDIDQWHDKIFVTMLRYN 84


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 92  YPNHYLSDVYQHIT*VMIRVYRYN 21
           Y N+Y SD+ Q    + + + RYN
Sbjct: 61  YKNNYPSDIDQWHDKIFVTMLRYN 84


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 129 FILCIVIHYCNDIPESLPK*CVS 61
           F++C V  +C +I  S  K C+S
Sbjct: 281 FLICWVPFFCVNIVTSYCKTCIS 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,076
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)