Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0615
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   144   9e-35
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    28   6.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  144 bits (348), Expect = 9e-35
 Identities = 72/91 (79%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
 Frame = +3

Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
           + FEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIG-SHT 518
           TAIRGAI+ AKL+V+PVRRGYWGNKIG  HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175



 Score =  130 bits (313), Expect = 2e-30
 Identities = 58/82 (70%), Positives = 64/82 (78%)
 Frame = +2

Query: 512 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 691
           PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNF
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232

Query: 692 XXXXXXXXXXXXXXLTPDLWRD 757
                         LTPDLW++
Sbjct: 233 AKATYAALQRTYSYLTPDLWKE 254



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +1

Query: 148 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 542 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 673
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 542 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 673
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 634 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 530
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 151 DQKEWVPVTKLGRLVREGKIDKLESI----YLFSLPIKDSRSLISSSARP*MMRFLRSCL 318
           DQ +   ++K    +     D L+SI    YL +  IKD +  I+ S+ P ++  + +  
Sbjct: 574 DQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALSSVPSIVNSITTAK 633

Query: 319 YRNKHVPDSAHVSRHLLPLATT 384
              + V D  H    +LP  TT
Sbjct: 634 INEETVQDLIHNDNAILPRTTT 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,271
Number of Sequences: 27780
Number of extensions: 423471
Number of successful extensions: 1167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)