Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0614
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    31   0.12 
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    30   0.36 
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    28   1.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.9  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   7.8  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   7.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.8  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   7.8  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 274 GAGLSLTETMDVFERWSTNEEYKYLLQLREHV 369
           G G+S  E  DVFE+W+T +   +L+++   V
Sbjct: 211 GLGMSCDEIADVFEKWNTGKLDSFLIEITRDV 242


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +1

Query: 208 DLHRHIVDRPTEGRALDENLNLGAGLSLTETMDVFERWSTNEEYKYLLQLREHVDLVAHV 387
           D+   ++ +  EGR        G+G +    + + E+WS +    + L L    +L   +
Sbjct: 32  DIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQI 91

Query: 388 PVRNIGTLGGNLALKN 435
                  LG NL LK+
Sbjct: 92  D-EQFAALGANLNLKH 106


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = -3

Query: 578 AYEIIFEIHFQELRHAHIRNLHIVFIIPTVAPIVSSSKKISEGNSLCLFFKAKFPPRVPI 399
           A+E +F  H   L   HI       +   +A + +++  +S+G+ +  F  + F P    
Sbjct: 188 AFEFLFSSHRLYLDTVHIT----AALSQVLAGLGNTNTSMSDGDCIAAFLSSYFSPPNAE 243

Query: 398 FRTGTCATKSTCSRS 354
           F +  C+T S+ + S
Sbjct: 244 FDSTFCSTLSSLTNS 258


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 157 GRRKHGARSLSNKNGAKDLHRHIVDRPTEGRALDE 261
           G R    RSL  K     +   ++D PT+ R LDE
Sbjct: 66  GNRFEELRSLREKEREVAIQNGLIDDPTKPRQLDE 100


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 235  PTEGRALDENLN-LGAGLSLTETMDVFERWSTNEEYK 342
            P +G   +  L+ +GAG + T   D  E W+ +EE K
Sbjct: 1129 PDDGNPAEYILDVIGAGATATTNRDWHEVWNNSEERK 1165


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 184 LSNKNGAKDLHRHIVDRPTEGRALDENLNLGAGLSLTETMDVFERWSTNEEYKYL 348
           L N  G K   +HI  +P +    + +L+  A   + +T+D   R +  E+  Y+
Sbjct: 153 LGNNRGNKYSRKHITYKPKDEEFWNFSLDDMAMFDIPDTVDYILRETGREKLNYI 207


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 431  FKAKFPPRVPIFRTGTCATKSTCSRSCSKYLYSSFVDHLSKTSMVSVKL 285
            F+  +P R P  +   CA  +   R C+KY+    V +L   ++  +++
Sbjct: 1306 FQGLWPLRTPEEKEEVCAVYNISQRVCTKYVQFGNVFNLLHAAVSYIRI 1354


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 352 QLREHVDLVAHVPVRNIGTLGGNLA 426
           Q R H  LV   PV   GT+G N+A
Sbjct: 555 QWRSHFGLVGQEPVLFSGTIGENIA 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,952
Number of Sequences: 5004
Number of extensions: 58564
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)