Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0614
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        24   1.6  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   2.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 259 ENLNLGAGLSLTETMDVFERWSTNEEYKYLLQ 354
           E LNL   LSLTET    + W  N   K+  Q
Sbjct: 37  ERLNLALSLSLTETQ--VKIWFQNRRTKWKKQ 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 LVLQSQVPTKSADISYRHVCD*IHMLTELQQVFVLLVRRPP 316
           ++ Q Q+ +  A  S  + C   ++    QQ+  LLV+ PP
Sbjct: 868 VIAQLQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPP 908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 LVLQSQVPTKSADISYRHVCD*IHMLTELQQVFVLLVRRPP 316
           ++ Q Q+ +  A  S  + C   ++    QQ+  LLV+ PP
Sbjct: 864 VIAQLQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPP 904


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 238 TEGRALDENLNLGAGLSLTETMDVFERWSTNEEYKY 345
           T+  AL E   L A L LT+T    + W  N   KY
Sbjct: 3   TQYLALPERAELAASLGLTQTQ--VKIWFQNRRSKY 36


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 338 YSSFVDHLSKTSMVSVKLRPAPRFKFSSN 252
           +  F   L   ++V+  L+P P F+ S N
Sbjct: 14  FEEFAKVLGDQNLVNTVLQPRPSFELSKN 42


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 338 YSSFVDHLSKTSMVSVKLRPAPRFKFSSN 252
           +  F   L   ++V+  L+P P F+ S N
Sbjct: 16  FEEFAKVLGDQNLVNTVLQPRPSFELSKN 44


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 325 TNEEYKYLLQLREHVDLVAHVPVRNIGTLG 414
           T E++KY+  + + + L     V   GT+G
Sbjct: 467 TREDWKYVAMVIDRLQLYIFFLVTTAGTIG 496


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 646 WARGIILYVL 617
           WA G+ILY+L
Sbjct: 96  WACGVILYIL 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,208
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)