Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0613
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 78 2e-15
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 54 3e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 6e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.32
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.42
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.74
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 3.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 6.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.1
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 9.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 9.1
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 77.8 bits (183), Expect = 2e-15
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = +2
Query: 257 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
AR+C + CY CN TGH A EC + E +CY C GH+ R+CP CY
Sbjct: 29 ARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYK 87
Query: 437 CNKSGHISRNC 469
C + GHI+R+C
Sbjct: 88 CGRVGHIARDC 98
Score = 76.6 bits (180), Expect = 4e-15
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Frame = +2
Query: 257 ARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES-- 415
A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G++S
Sbjct: 48 ASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGG 107
Query: 416 ------ATQTCYNCNKSGHISRNCPDGTKTCYVCGK 505
+ CY C GH +R+C G K CY CGK
Sbjct: 108 RFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGK 142
Score = 75.4 bits (177), Expect = 9e-15
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 463
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 464 NCPDGTK-----TCYVCGK 505
+CP CY CG+
Sbjct: 72 DCPSSPNPRQGAECYKCGR 90
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 347 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCG 502
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYACG 64
Score = 58.8 bits (136), Expect = 8e-10
Identities = 26/61 (42%), Positives = 32/61 (52%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
CY C GH AR+C CY+C K GH + C + S Q CY CN+ GHI+ N
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVN 171
Query: 467 C 469
C
Sbjct: 172 C 172
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +2
Query: 257 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 394
ARDC +CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 128 ARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGH 254
S P + CYKC R GH AR+C G S G +R C+ C GH
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S+CY CN+TGH A ECT+ +Q + C+ C GHL
Sbjct: 36 SICYNCNQTGHKASECTEP----------QQEKTCYACGTAGHL 69
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
CY C GH ARECT+G + C+ CN+TGH
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGH 46
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNRTGHL 257
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+ GH+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQPGHI 168
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 114 AMSSSVCYKCNRTGHFARECT 176
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 245 HRTLARDCKEEADRCYRCNGTGHIAREC 328
HR+ + CY+CN GHIA C
Sbjct: 145 HRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 245 HRTLARDCKEEADR-CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESA 418
+R L R + D+ C+ C GHI ++C ++ D S C+ C H C + G
Sbjct: 64 YRRLRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKF 123
Query: 419 TQTCYNCNKSGHISRNCPDGTKTCYVCG 502
+ C+ C+++GH+S C K Y G
Sbjct: 124 AK-CFICHENGHLSGQCEQNPKGLYPKG 150
Score = 33.9 bits (74), Expect = 0.026
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 421
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHLRG 263
S+C++C H C++ G + + KCF C+ GHL G
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSG 137
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Frame = +2
Query: 287 CYRCNGTGHIAREC----------------AQSPDEPSCYNCNKTGHIARNCPEGGRESA 418
C+ C G GHI+++C + P C NC GHIA C E R+
Sbjct: 89 CHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE-PRKRG 147
Query: 419 TQTCYNCNKSGHISRNCP 472
+ C C+ H S CP
Sbjct: 148 PRVCRTCHTDTHTSSTCP 165
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCG 502
C+NC GHI+++CP C C HIS CP TK C CG
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCG 131
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 401 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 502
G S + C+NC +GHIS++CP C CG
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCG 111
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGR-------------ESA 418
+C C GHIA C++ C C+ H + CP R
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEV 185
Query: 419 TQTCYNCNKSGHISRNCPDGTKTCY 493
+ CYNC H +C +++ Y
Sbjct: 186 RKFCYNCASDEHFGDDCTLPSRSNY 210
Score = 29.5 bits (63), Expect = 0.56
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = +3
Query: 123 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S VC+ C GH +++C T G + S +KC C GH+
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHI 136
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 472
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 407 RESATQTCYNCNKSGHISRNCPD 475
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEP 349
C C GHIAR+C +P
Sbjct: 336 CRHCGSIGHIARDCPVRDQQP 356
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 389 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 499
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 332 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 502
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 404 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 508
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 332 QSPDEPSCYNCNKTGHIARN--CPEGGR 409
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 126 SVCYKCNRTGHFAREC 173
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 452 HISRNCPDGTKTCYVCGK 505
H + CP TCY CGK
Sbjct: 1794 HTGKACPVRLSTCYKCGK 1811
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 126 SVCYKCNRTGHFAREC 173
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 452 HISRNCPDGTKTCYVCGK 505
H + CP TCY CGK
Sbjct: 1794 HTGKACPVRLSTCYKCGK 1811
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 518 EMWRACRTRSTSWCRRDSCGRCGRTCCSYSRSAS-QTPAPPRDSSVRCGPSCCSCNMTAR 342
E+ CRT T R+ C CG C+ S + P + VR SC S + +
Sbjct: 174 EVCLRCRTPFTFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYS--LRTK 231
Query: 341 PGSVRTRA 318
P ++RA
Sbjct: 232 PKGSKSRA 239
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 320 RECAQSPDEPS-----CYNCNKTGHIARNCP 397
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 428 CYNCNKSGHISRNCPDGTKTCYVCGKP 508
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 9.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 129 VCYKCNRTGHFAREC 173
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 488 TSWC-RRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALC 312
+S C ++DS +CCS + + + P S CCS T+ +
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCT 281
Query: 311 AQCRYICSNGQPLPC 267
++ CSNG+ C
Sbjct: 282 SEKPSCCSNGKSTVC 296
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -2
Query: 398 RDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQVSCAVA 237
+DSS PSCCS + S + + + CS + C+ + SC +
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTS 282
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 503 CRTRSTSWCRRDSCGRCGRTCCSY 432
C T T + R+ C CG+ C Y
Sbjct: 69 CETEFTLFRRKHHCRICGKIICKY 92
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 401 GGRESATQTCYNCNKSG 451
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 437 SYSRSASQTPAPPRDSSVRCGPSCCSCN 354
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,633
Number of Sequences: 5004
Number of extensions: 53584
Number of successful extensions: 215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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