Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0612
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 82 7e-17
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 1e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 4e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.30
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.8
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 6.4
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 6.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 8.5
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.5
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.5
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 82.2 bits (194), Expect = 7e-17
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 436
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 437 CYNCNKSGHISRNC 478
CY C + GHI+R+C
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Frame = +2
Query: 257 GHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRE 421
GH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G++
Sbjct: 45 GHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQ 104
Query: 422 S--------ATQTCYNCNKSGHISRNCPDGTKTCYVC 508
S + CY C GH +R+C G K CY C
Sbjct: 105 SGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSC 140
Score = 72.1 bits (169), Expect = 7e-14
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 472
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 473 NCPDGTK-----TCYVC 508
+CP CY C
Sbjct: 72 DCPSSPNPRQGAECYKC 88
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Frame = +2
Query: 257 GHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 397
GH ARDC+ + CY C GH AR+C CY+C K GH +
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSF 148
Query: 398 NCPEGGRESATQTCYNCNKSGHISRNC 478
C + S Q CY CN+ GHI+ NC
Sbjct: 149 ECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 356 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVC 508
P CYNC + GH AR C +G CYNCN++GH + C P KTCY C
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYAC 63
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 248
S P + CYKC R GH AR+C G S G +R C+ C
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 254
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQDT 263
CY C GH ARECT+G + + + +C + ++ T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.098
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 123 AMSSSVCYKCNRTGHFARECT 185
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 254
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 472
C+ C GHI ++C ++ D S C+ C H C + G + C+ C+++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENGHLSG 137
Query: 473 NCPDGTKTCY 502
C K Y
Sbjct: 138 QCEQNPKGLY 147
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +2
Query: 257 GHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKTGHIARNCPEG--G 415
GH +DC E D C+RC H C+ + P + C+ C++ GH++ C + G
Sbjct: 86 GHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKG 145
Query: 416 RESATQTCYNCNKSGHISRNCPDGTK 493
C C+ H++++C K
Sbjct: 146 LYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +2
Query: 329 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 496
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 497 CYVC 508
C++C
Sbjct: 126 CFIC 129
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 430
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNKTGHI 391
+F D E+ C+ C G GHI+++C + P C NC GHI
Sbjct: 78 YFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHI 136
Query: 392 ARNCPEGGRESATQTCYNCNKSGHISRNCP 481
A C E R+ + C C+ H S CP
Sbjct: 137 AARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPE-------------GGRESATQTCYNCNKSGHISRNCPD----GT 490
C+NC GHI+++CP R T+ C NC GHI+ C + G
Sbjct: 89 CHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGP 148
Query: 491 KTCYVC 508
+ C C
Sbjct: 149 RVCRTC 154
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.39
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +2
Query: 257 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 358
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 398 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 508
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 413 GRESATQTCYNCNKSGHISRN--CP 481
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 341 QSPDEPSCYNCNKTGHIARN--CPEGGR 418
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 135 SVCYKCNRTGHFAREC 182
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIAREC 337
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 135 SVCYKCNRTGHFAREC 182
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIAREC 337
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 329 RECAQSPDEPS-----CYNCNKTGHIARNCP 406
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.4
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Frame = -2
Query: 437 RSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQC---RYICSNGQPLPCNPS 267
++ S AP +V+ G + + + R RT+ C C R C +P+ N
Sbjct: 8 KTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTKTGCLTCRKRRIKCDERKPICYNCI 67
Query: 266 QSXXXXXXXXXXXLPIETGIPRHHAPLRAFAREMPGPVALVANA*TH 126
+S P T P+ + E P P L A TH
Sbjct: 68 KSKRQCEGYTHFPRPSGTFTASRRIPVSSLLSE-PAPHGL-AGQPTH 112
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 497 TSWC-RRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALC 321
+S C ++DS +CCS + + + P S CCS T+ +
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCT 281
Query: 320 AQCRYICSNGQPLPC 276
++ CSNG+ C
Sbjct: 282 SEKPSCCSNGKSTVC 296
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 721 YKSTVEPHSSVCGADAXLHLYCNRLSCVARGVL 623
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSG 460
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 446 SYSRSASQTPAPPRDSSVRCGPSCCSCN 363
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,041
Number of Sequences: 5004
Number of extensions: 49383
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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