Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0612
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 75 4e-14
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 72 3e-13
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 68 7e-12
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 7e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 54 1e-07
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 49 3e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 49 3e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.002
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 39 0.004
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.037
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.085
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.15
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.15
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.20
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.20
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.20
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.26
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.26
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.34
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.45
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.60
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.60
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.60
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.60
At3g31950.1 68416.m04046 hypothetical protein 31 0.79
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.0
At5g47430.1 68418.m05844 expressed protein 30 1.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.4
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.4
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.4
At4g17410.1 68417.m02607 expressed protein 30 1.4
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.4
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.4
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.4
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 1.8
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 1.8
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.8
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.8
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.4
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.4
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.4
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.4
At5g61670.2 68418.m07738 expressed protein 29 3.2
At5g61670.1 68418.m07737 expressed protein 29 3.2
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 3.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.2
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.2
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.2
At4g06479.1 68417.m00885 hypothetical protein 29 4.2
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 4.2
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.2
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.6
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.6
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.6
At4g06526.1 68417.m00938 hypothetical protein 28 7.4
At2g31850.1 68415.m03889 expressed protein 28 7.4
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.4
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 9.8
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 9.8
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 9.8
At2g19400.1 68415.m02263 protein kinase, putative contains prote... 27 9.8
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 9.8
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 9.8
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = +2
Query: 257 GHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIA 394
GHFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 395 RNCPEGGRESA--TQTCYNCNKSGHISRNC 478
R+C + G CY C K GH +R C
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 62.1 bits (144), Expect = 4e-10
Identities = 45/141 (31%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDC------------KEEADRCYRCNGTGHIAR 331
GG G G R GHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 332 ECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 454
+C Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 455 SGHISRNCP---DGTKTCYVC 508
GHI+R+C ++ CY C
Sbjct: 238 VGHIARDCATKRQPSRGCYQC 258
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +2
Query: 296 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 433
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 434 ---TCYNCNKSGHISRNC 478
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 257
CY+C +GH AR+C Q R SG C+KC ++
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Frame = +2
Query: 257 GHFARDCKEEA-------DRCYRCNGTGHIARECA 340
GH ARDC + + CY+C GH AREC+
Sbjct: 262 GHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 35.1 bits (77), Expect = 0.049
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECT 185
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 248
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDG 487
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 132 SSVCYKCNRTGHFAREC 182
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/75 (45%), Positives = 41/75 (54%)
Frame = +2
Query: 254 PGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 433
PGHFARDC C C GHIA EC E C+NC + GH+A NC G
Sbjct: 63 PGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------ 112
Query: 434 TCYNCNKSGHISRNC 478
C++C KSGH +R+C
Sbjct: 113 ICHSCGKSGHRARDC 127
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 PGHFARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRE 421
PGH A +C E C+ C +GH AR+C+ S D C NC K GH+A +C
Sbjct: 101 PGHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------ 153
Query: 422 SATQTCYNCNKSGHISRNCPDGTKTCYVC 508
+ + C NC SGHI+R+C + C +C
Sbjct: 154 TNDKACKNCRTSGHIARDCRN-DPVCNIC 181
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +2
Query: 257 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
GH ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 121 GHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN--- 174
Query: 419 ESATQTCYNCNKSGHISRNCPDG 487
C C+ SGH++R+CP G
Sbjct: 175 ---DPVCNICSISGHVARHCPKG 194
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +2
Query: 284 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 463
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 464 ISRNCPDGTKTCYVC 508
++ NC C+ C
Sbjct: 104 VASNC-SNEGICHSC 117
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 28/103 (27%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP---------- 406
GH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP
Sbjct: 147 GHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRG 202
Query: 407 ----EGGRE--------------SATQTCYNCNKSGHISRNCP 481
+GG + SA C+NC GH + CP
Sbjct: 203 SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGV 197
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 245
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 67.7 bits (158), Expect = 7e-12
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Frame = +2
Query: 257 GHFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIA 394
GHFARDC++ CY C G GHIA+ C +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 395 RNCPEGGRESA-----TQTCYNCNKSGHISRNC 478
R+C G S+ + C+ C K GH +R C
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = +2
Query: 290 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 439
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 440 YNCNKSGHISRNC 478
Y C +GH++R+C
Sbjct: 255 YECGGTGHLARDC 267
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNCPEG----------GR 418
CY C GH AR+C QS S CY+C + GH+A++C G GR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 419 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVC 508
S CY C GH +R+C G TCY C
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTC 229
Score = 54.4 bits (125), Expect = 7e-08
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 25/111 (22%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADR-----CYRCNGTGHIAREC--------------AQSPDE 355
+ ++V PG + + KE + R C+ C GH+A++C +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 356 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 490
CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 257
CY+C TGH AR+C + G S SG KCF C ++
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECT 185
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSG 215
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 248
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Frame = +2
Query: 260 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 412
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 413 GRESATQ--TCYNCNKSGHISRNCPDGTKTCY 502
+ T+ +C+ C GHIS+NCP+ Y
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIY 175
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +2
Query: 308 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 487
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 488 T------KTCYVC 508
K CY C
Sbjct: 118 NNESSEKKLCYNC 130
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 412
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 413 ----GRESATQTCYNCNKSGHISRNCPDGTK 493
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +2
Query: 284 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 424
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +2
Query: 257 GHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 424
GH + +C R C+ C H A++C++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 425 ATQTCYNCNKSGH 463
C C GH
Sbjct: 232 KGAVCLRCGDFGH 244
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 296 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 472
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 473 NCPDGTK 493
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 251
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 508
SCY+C + GH + NCP + + C+ C H ++ C G CY+C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYIC 213
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 11/41 (26%)
Frame = +2
Query: 257 GHFARDC-----------KEEADRCYRCNGTGHIARECAQS 346
GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNRQDT 263
S ++CY+CN +GHFAREC VS RD + K K N++++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Frame = +2
Query: 257 GHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS---------- 361
GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 246 GHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGE 305
Query: 362 CYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 496
CY C K GH +R+C + G+ +T + CY C K+GH SR+C +T
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +2
Query: 296 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 418
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 419 -ESATQTCYNCNKSGHISRNC 478
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 123 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 254
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 96 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRQ 257
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 96 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 233
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 254
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 35.5 bits (78), Expect = 0.037
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Frame = +2
Query: 221 SAT*EVLQVQPPGHFARDCKEEADR----------------CYRCNGTGHIARECA-QSP 349
SA + + PGH++RDC ++ CY+C GH +R+C QS
Sbjct: 265 SAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSS 324
Query: 350 DEP-------------SCYNCNKTGHIARNCPEGGRESAT 430
++ CY C K GH +R+C + + T
Sbjct: 325 NQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNT 364
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 458 GHISRNCPDGTKTCY 502
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Frame = +2
Query: 236 VLQVQPPGHFARDCKEEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARN 400
+ +V P R +EA+ C RC G GH C + CY CN GH+
Sbjct: 8 ISRVCDPLIMPRHNDDEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC-- 65
Query: 401 CPEGGR-ESATQTCYNCNKSGHISRNC-----PDGTKTCYVC 508
C E G +S T +CY C + GH C + +C++C
Sbjct: 66 CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFIC 107
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 442
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 443 NCN----------KSGHISRNCPDGTKTCY 502
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 317 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 478
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 479 PDGTK 493
P+ ++
Sbjct: 211 PNSSQ 215
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Frame = +2
Query: 191 GRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 361
G + RFQ T E + GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 362 -----CYNCNKTGHIARNCPEGGR 418
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 81 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 200
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 326 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 326 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 326 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPG---HFARDCKEEADRCYRCNGTGHI 325
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 54 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 326 ARECAQSPDEPSCYNCNKTGHIARNC 403
AR+C + CY C + GHI RNC
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 257 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQG 191
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPG---HFARDCKEEADRCYRCNGTGHI 325
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 13 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 326 ARECAQSPDEPSCYNCNKTGHIARNC 403
AR+C + CY C + GHI RNC
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 257 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 349
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQG 191
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 476 CPDG 487
C G
Sbjct: 195 CTSG 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 361
GGRG G + PGH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 362 CYNCNKTGHIARNCPEGG 415
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 487
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 484
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 296 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 457
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 458 GH 463
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.45
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 442
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 443 NCNKSGHISRNCP 481
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 33.9 bits (74), Expect = 0.11
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTG---HIARECAQSPD---------EPSCYNCNKTGHIARNC 403
H+ + ADR +RC G G H R C +S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Query: 404 --PEG------GRESA-------TQTCYNCNKSGHISRNCP 481
P G G S T C C K GH R CP
Sbjct: 337 RKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRC------------YRCNGTGHIAR 331
GGRG G R S + + PGH ARDC E Y G G+
Sbjct: 119 GGRGGGG-RGGS---DCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 332 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 454
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 455 SGHISRNCPDG 487
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGG 194
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.79
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCPDG 487
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 245 VQPPGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 415
+ P G A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 496
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 230
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 284 EADRCYRCNGTGHIAREC 337
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 230
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 284 EADRCYRCNGTGHIAREC 337
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 230
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNC 478
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.79
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 293 RCYRCNGTGHIAREC 337
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 141 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 230
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 413 GRESATQTCYNCNKSGHISRNC 478
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 293 RCYRCNGTGHIAREC 337
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.085
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSG 215
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 493
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGT---KTCYVC 508
TCY+C + HI+ +CP T K+C++C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFIC 171
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 362 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 487
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 296 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 430
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 355
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.79
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 355
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.79
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 415
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.26
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCP 481
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 290 DRCYRCNGTGHIAREC 337
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPE 409
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 349 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 404 PEGGRESATQTCYNCNKSGHISRNC 478
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 218 QSAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREC 337
Q+A V +V+ P + + + CYRC GH+AR+C
Sbjct: 903 QNAKTAVTEVKKP---SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 362 CYNCNKTGHIARNC 403
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 415
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 419 ESATQTCYNCNKSGHISRNCP 481
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVS 203
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGGRESATQ 433
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGTKTCYV 505
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 469
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 470 RNCP 481
CP
Sbjct: 327 MYCP 330
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 269 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 446 CNKS 457
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 302 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 415
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD 484
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 111 SKPIAMSSSVCYKCNRTGHFAREC 182
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 290 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 463
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 464 ISRNC 478
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 323 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 418
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 349 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 349 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 492
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD-GTKTC 499
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSP 349
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 458 GHIS 469
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 323 IARECAQSP-DEPSCYNCNKTGHIARNCP 406
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 451
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 452 KSGHISRNCP 481
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGTKT 496
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 362 CYNCNKTGHIARNCP 406
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFAREC 182
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 458 GHISRNCP 481
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 458 GHISRNCP 481
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 403
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCPD 484
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCP 481
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCP 481
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 473 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 387
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 99 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 209
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIARECAQS 346
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPE 409
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 437 CYNCNKSGHISRNCP 481
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 296 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 406
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -2
Query: 485 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 342
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 290 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 460
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 461 HISRNC 478
IS C
Sbjct: 275 EISTPC 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 305 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 406
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRK 513
QQ+ P + +L R A VCD L L +R HL + + H DVLR K
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALK 678
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 506 TRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 375
T + C C RC CS S S T PP S+ C P C
Sbjct: 321 TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At2g19400.1 68415.m02263 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 527
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 262 VSWRLHLKHFSRCRLKPESRD 200
VSWR HL RL PE+RD
Sbjct: 365 VSWRTHLVFPEGARLTPEARD 385
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 323 IARECAQSPDEPS-CYNCNKTGHIARNC 403
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 275 CKEEADRCYRCNGTGHIARECA 340
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,024
Number of Sequences: 28952
Number of extensions: 299748
Number of successful extensions: 1336
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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