Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0610
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.63 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   0.83 
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   3.4  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   3.4  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   4.4  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   4.4  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   7.7  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 479 YDKCTRNGSRTGSS*XEDSCSYRRR 553
           + KC+ NG R G S  ED+C  +RR
Sbjct: 612 FKKCSINGIRYGKSHNEDTCIKKRR 636


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 405 LLRFLRTKKYSIPQACSMLXXVPDHTTNVPAMVPELDPLXPKIAAVIDAGYLV 563
           ++  +R  K  + QA S L  VPD++TN  ++ P+     PK A++     LV
Sbjct: 64  IMCLIRQDKDIVNQAISQLK-VPDYSTNTYSLKPKKPHTTPKPASIYTFNELV 115


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 103 LDFKFNSRIKMATSVLQPEDCRREHEPKPDII-ESPR-LTDDERVHILEAKERRPVNCRL 276
           + FK   +I  ATS  +   C + H  K + I E P  +  + +  I E      ++CR 
Sbjct: 359 IPFKDLMKILAATSEDELVQCCKMHGLKIEYIGEQPSAVVLNRKTVITEPLLSSEISCRF 418

Query: 277 SFGKKPGSN 303
           +  KKPG+N
Sbjct: 419 ADEKKPGTN 427


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 336 LNQMRHFIEKHPAIKKCRQDAPFLLRFLRTKKYSIP 443
           L Q++H +  H ++   ++   F+L+FLRT   S+P
Sbjct: 158 LKQLKHALGLHTSVDNSQE---FILQFLRTTLLSVP 190


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 115 FNSRIKMATSVL-QPEDCRREHEPKPDIIESPRLTDDERVHI 237
           FN  +++ + +L    DC      +P+I  SPR++ +E++ I
Sbjct: 106 FNINVQIHSLILPSAHDCSANVVDRPEISMSPRISIEEKLEI 147


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 205 PRLTDDERVHILEAKERR 258
           P+L DD+R ++L++ ERR
Sbjct: 266 PKLLDDDRFYVLDSGERR 283


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +1

Query: 142 SVLQPEDCRREHEPKP-DIIESP-------RLTDDERVHILEAKE 252
           S L+PE  RR+HE K  +II+SP        L + E VH L  K+
Sbjct: 2   STLEPEK-RRQHEDKSNEIIDSPIFLNKISALPESENVHCLLLKQ 45


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 387 RQDAPFLLRFLRTKKYSIPQACSM 458
           R D   LLRFLR +K+++ Q+  M
Sbjct: 47  RLDDATLLRFLRARKFNLQQSLEM 70


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 462 PASSRPGVLSISLYAGNAT 406
           PA  RPG + +  Y GNAT
Sbjct: 354 PALVRPGRVDVKAYLGNAT 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,034
Number of Sequences: 5004
Number of extensions: 44326
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)