Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0610
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    31   0.85 
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857...    29   2.6  
04_03_1005 + 21646323-21646403,21646724-21646906,21648014-216481...    29   2.6  

>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 400 HSCCVSCVQRNTQYPRPARCWXRYLTIRQMYPQWFQNWIL 519
           HS C  C+  +  +     C   YLT  Q+YP +  + +L
Sbjct: 77  HSFCYMCIVTHLSHKSDCPCCGNYLTKAQLYPNFLLDKVL 116


>11_04_0001 +
           11984639-11984875,11984989-11985278,11985361-11985719,
           11985797-11985984,11986058-11986247,11986497-11986631,
           11986694-11986947
          Length = 550

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 PEDCRREHEPKPDIIESPRLTDDERV-HILEAKERRP 261
           P   +    P+P+II  P + D+E +  I  AK+ RP
Sbjct: 280 PVKAQESTRPRPEIITGPMIGDEEEILRIRAAKDSRP 316


>04_03_1005 +
           21646323-21646403,21646724-21646906,21648014-21648133,
           21648458-21648649,21648848-21649153,21650004-21650714
          Length = 530

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 565 GTRYPASITAAIFGSR-GSSSGTIAGTFVVW 476
           GT  PA I    F  R GSS+G IA  FV+W
Sbjct: 308 GTFVPAQILFDAFHGRYGSSAGAIALLFVIW 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,004
Number of Sequences: 37544
Number of extensions: 274854
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)