Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0609
         (823 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   6.8  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 531 MFTIHAEKYQ--PHSWFYAMTHEVIKHEIKVPNETAIFVYKDNEAF 662
           M+T+  E  Q  PH W Y     V   + +VP    I+++ ++  F
Sbjct: 73  MYTVLLEFVQIDPHRWKYVNGEWVPGGKAEVPPSNPIYIHPESPNF 118


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 777 NIGSGILGKNPNLSEVIHCLRCC 709
           N  +  L KNP+LS    C R C
Sbjct: 90  NSATAELLKNPSLSSPDECARAC 112


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 777 NIGSGILGKNPNLSEVIHCLRCC 709
           N  +  L KNP+LS    C R C
Sbjct: 90  NSATAELLKNPSLSSPDECARAC 112


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 601 NMKSKFLMKQLYLFIKIMKHFSLKLKMNYLKTKIC*TT 714
           NM +  L +++ L  ++++HF  +++  ++  KIC TT
Sbjct: 254 NMLTTPLSEEV-LLDELLRHFPERIQSLWVLEKICTTT 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,462
Number of Sequences: 336
Number of extensions: 4674
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)