Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0609
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 50 2e-06
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 49 4e-06
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 48 7e-06
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 46 5e-05
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 45 9e-05
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 44 1e-04
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 44 1e-04
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 44 1e-04
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 44 2e-04
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19) 42 6e-04
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 37 0.023
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 33 0.37
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058) 30 2.0
SB_48746| Best HMM Match : fn3 (HMM E-Value=7.2) 29 6.0
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78) 28 8.0
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +2
Query: 122 VLELSDRFLEF----SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
V+EL+D E SKD +W V+F+APWC HC+R+ P WA A L
Sbjct: 81 VVELTDTNFEKEVLNSKD-LWLVEFFAPWCGHCQRLAPEWAKAATEL 126
Score = 42.3 bits (95), Expect = 5e-04
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Frame = +1
Query: 262 VKVAKVDCTRFTAVASHFHIRAYPTI-LF---LKGSFQ-HEYTGDRVKEDLINYAMRMSQ 426
VKV +D T T AS + ++ YPTI +F +K S +Y G R D+I YA+ +
Sbjct: 130 VKVGALDATVHTVTASRYQVQGYPTIKVFAAGIKNSHSVEDYQGGRTASDIIQYALDKAA 189
Query: 427 PAVQ--RISRGNSIEYLKE---SHPV 489
+++ + + S E LKE HP+
Sbjct: 190 DSIEPPEVIQAISNEVLKEGCNEHPI 215
Score = 34.3 bits (75), Expect = 0.12
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = +1
Query: 298 AVASHFHIRAYPTILFL---KGSFQHEYTGDRVKEDLINYAMRMSQPAV-QRISRG 453
+V ++IR +PTI K S Q +Y G R + +++ AMR +Q AV QR+S G
Sbjct: 6 SVGGPYNIRGFPTIKIFGANKNSPQ-DYNGQRTAQGIVDAAMRAAQEAVSQRMSGG 60
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 271 AKVDCTRFTAVASHFHIRAYPTI-LFLKGSFQHEYTGDRVKEDLINY 408
AK+DCT+F V + YPT+ +L G F EY GDRV EDLI++
Sbjct: 202 AKLDCTKFGDVCDKEEVNGYPTLRYYLYGKFVVEYDGDRVTEDLISF 248
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 128 ELSDRFLEFSKDGMWFVKFYAPWCSHCRRMEPTWAHVAQALY 253
E D F++ ++ + V ++APWC HC M+P + AQ L+
Sbjct: 58 ESHDEFIKSHENVL--VMYFAPWCGHCNEMKPNYYKAAQVLH 97
Score = 35.5 bits (78), Expect = 0.052
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 176 VKFYAPWCSHCRRMEPTWAHVAQ 244
V FYAPWC HC+ +P + A+
Sbjct: 169 VMFYAPWCGHCKNAKPKYEKAAE 191
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 48.4 bits (110), Expect = 7e-06
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +1
Query: 262 VKVAKVDCTRFTAVASHFHIRAYPTILFLKGSFQHEYTGDRVKEDLINYAMRMSQPAVQR 441
+K+AKVD T T + F ++ YPTI F K EY G R +++++ + + P +
Sbjct: 77 IKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKPSEYAGGRTAPEIVSWLNKKTGPPAKD 136
Query: 442 ISRGNSIEYLKESHPVFFGFIGNRK 516
++ ++++ GF +++
Sbjct: 137 LATADAMKDFITKEVAVVGFFTDKE 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 155 SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQ 244
+KD FV+FYAPWC HC+++ P W + +
Sbjct: 400 NKDKNVFVEFYAPWCGHCKQLAPIWDQLGE 429
Score = 37.9 bits (84), Expect = 0.010
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 176 VKFYAPWCSHCRRMEPTWAHVAQAL 250
V+FYAPWC HC+ + P +A A L
Sbjct: 46 VEFYAPWCGHCKALAPEYAKAAGQL 70
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 45.6 bits (103), Expect = 5e-05
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 164 GMWFVKFYAPWCSHCRRMEPTWAHVAQ 244
G+ FVKFYAPWC HC ++ P W +A+
Sbjct: 107 GLHFVKFYAPWCIHCIKLAPIWERLAE 133
Score = 35.9 bits (79), Expect = 0.040
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 268 VAKVDCTRFTAVASHFHIRAYPTI-LFLKGSFQHEYTGDRVKEDL 399
+AKVDCT + +IRAYPT+ L+ G + YTG R ED+
Sbjct: 21 IAKVDCTSDVNLCVKQNIRAYPTMKLYYDGDIK-RYTGRRNAEDM 64
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 44.8 bits (101), Expect = 9e-05
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 122 VLELSDRFLE--FSKDGMWFVKFYAPWCSHCRRMEPTWAHVAQALYIL 259
+LEL D E K V FYAPWC HC++M P + VA+ L IL
Sbjct: 136 LLELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLIL 183
Score = 37.9 bits (84), Expect = 0.010
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 110 SSSRVLELSDR-FLEFSKDGMW-FVKFYAPWCSHCRRMEPTWAHVAQAL 250
+S VL L+D+ F E K + V FYAPWCS C+R+ P + A L
Sbjct: 49 ASPAVLNLNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLFDTAALQL 97
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +2
Query: 74 LYIIFFTRIFNVSSSRVLELS-DRFLEF-SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQA 247
L+++F I +++ +V++L+ D F E + + V+FYAPWC HC+++ PT+ + +A
Sbjct: 10 LFLLF--SISSLTQGKVIDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTYEQLGEA 67
Score = 31.9 bits (69), Expect = 0.65
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 262 VKVAKVDCTRFTAVASHFHIRAYPTI-LFLKGS-FQHEYTGDRVKEDLINY 408
V +AKVD + S F ++ +PTI F KGS EY G R D I +
Sbjct: 74 VIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGRDINDFIKF 124
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 113 SSRVLELSDRFLEFSKDG--MWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
SS VL+L D + G + V+F+APWC HC+R+ P + A+AL
Sbjct: 537 SSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEAL 584
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 259 PVKVAKVDCTRF-TAVASHFHIRAYPTI-LFLKGSFQHEYTGDRVKEDLINYAMRMSQPA 432
PV +AKVDCT S + + YPT+ +F G +Y G R +I Y + + P+
Sbjct: 590 PVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDGPRDSSGIIRYMKKQAGPS 649
Query: 433 VQRISRGNSIE 465
I + +E
Sbjct: 650 SVEIKSVDHLE 660
Score = 38.3 bits (85), Expect = 0.007
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 176 VKFYAPWCSHCRRMEPTWAHVAQAL 250
++FYAPWC HC+ +EP + + + L
Sbjct: 885 IEFYAPWCGHCKSLEPKYNELGEKL 909
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 113 SSRVLELSDRFLEFSKDG--MWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
SS VL+L D + G + V+F+APWC HC+R+ P + A+AL
Sbjct: 12 SSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEAL 59
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 259 PVKVAKVDCTRFTAVASHFHIRAYPTILFLKGSFQHEYTGDRVKEDLINYAMRMSQP 429
PV AK+D T + +A F + YPT+ + +EY G R + ++ Y + S P
Sbjct: 113 PVPFAKMDATVASDIAQRFDVSGYPTLKIFRKGTPYEYEGPREESGIVEYMKKQSDP 169
Score = 40.3 bits (90), Expect = 0.002
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 155 SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
+++ + V+F+APWC HC+++ P + AQ L
Sbjct: 191 NRESLMLVEFFAPWCGHCKQLAPEYEKAAQEL 222
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 137 DRFLEFSKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
DR +E ++ + V+FYAPWC HC+ + P +A A+ +
Sbjct: 72 DRVIE--ENNIILVEFYAPWCGHCKSLAPEYAKAAKKM 107
Score = 36.3 bits (80), Expect = 0.030
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 PVKVAKVDCTRFTAVASHFHIRAYPTILFLKGSFQHEYTGDRVKEDLINYAMRMSQPAVQ 438
P+ +A VD T + +A + ++ YPT+ + EY G R + + +Y P+ +
Sbjct: 228 PIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATEYKGQRDQYGIASYMRSQVGPSSR 287
Query: 439 RISRGNSI-EYLKESHPV-FFGF 501
+S ++ +++KE V GF
Sbjct: 288 ILSSLKAVQDFMKEKDDVTIMGF 310
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 116 SRVLEL-SDRFLEF-SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
S V+ L D F +F +K+ V FYAPWC HC+ M+P + AQ L
Sbjct: 82 SEVVHLRDDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAAQTL 128
Score = 36.3 bits (80), Expect = 0.030
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 116 SRVLELSDR-FLEFSKDGMW-FVKFYAPWCSHCRRMEP 223
S V LSD F F K V FYAPWC HC++ +P
Sbjct: 195 SEVYHLSDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKP 232
>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
Length = 229
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 VKVAKVDCTRFTAVASHFHIRAYPTI-LFLKGSFQHEYTGDRVKEDLINYAMRMSQPAVQ 438
V++A+V+C +T V +I YPTI LF KG+ + Y G + L+ + + QP+
Sbjct: 10 VRLARVNCFDWTDVCQDNNITVYPTIKLFRKGADELIYGGPLDADHLVKAVILLQQPSPI 69
Query: 439 RISRGNSIEYLKESHP 486
R+S + +LK P
Sbjct: 70 RLSEDDIDPFLKGDIP 85
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 271 AKVDCT--RFTAVASHFHIRAYPTI-LFLKGSFQHEYTGDRVKEDLINYAMRMSQPAVQR 441
AKVDCT R + +F I YP++ LF G + +Y G R L+NY ++ A Q+
Sbjct: 75 AKVDCTDPRSKVLCDNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMESVTSTASQQ 134
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 80 IIFFTRIFNVSSSRVLELSDRFLE--FSKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
++FF+ + S++ V +L+ + + + + V FYAPWC HC+ + P A AL
Sbjct: 8 LLFFSAFSSGSANFVYDLNAQNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANAL 66
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 244 SLVYTPVKVAKVDCTRFTAVASHFHIRAYPTILFLKGSFQHEYTGDRVKEDLINY 408
S V PV VDCT + + ++IR+YPT + S H++ G D+I +
Sbjct: 330 SFVGKPVGFGTVDCTVHSQLCHQYNIRSYPTTILYNNSQPHQFIGHHNALDIIEF 384
Score = 37.9 bits (84), Expect = 0.010
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 155 SKDGMWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
+ + W V FYAPWC C R P + +A+ L
Sbjct: 449 ASEDAWVVDFYAPWCGPCMRFAPKYEQLAKML 480
Score = 36.7 bits (81), Expect = 0.023
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 250 VYTPVKVAKVDCTRFTAVASHFHIRAYP-TILFLKGSFQHEY 372
V T +++ VDC + + + + +H+R YP LF K F+ Y
Sbjct: 225 VLTDIRIGYVDCKKSSEICNEYHVRKYPVAALFKKAGFEWHY 266
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 170 WFVKFYAPWCSHCRRMEPTWAHVAQA 247
+FV F+APWC C R+ P + A++
Sbjct: 305 FFVDFFAPWCPPCMRLLPEYRKAARS 330
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 262 VKVAKVDCTRFTAVASHFHIRAYPTILFLKGSFQHEYT 375
V+ AKV+C + + S +I +YPT+ GS + T
Sbjct: 484 VRAAKVNCEQDYGLCSEANIHSYPTVRLYLGSTRQGMT 521
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 122 VLELSDR-FLEFSKDG-MWFVKFYAPWCSHCRRMEPTWAHVAQAL 250
+ EL+D+ F F KD + V FYAPWCS C + P + A+ L
Sbjct: 24 IFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYEKAARDL 68
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +2
Query: 62 FITGLYIIFFTRIFNVSS---SRVLELSDRFLEFSKDGMWFVK--FYAPWCSHCRRMEPT 226
FIT +++ IF +S +++E ++ ++ DG FV FYAPW HC+R+
Sbjct: 5 FITNTFLLISLTIFTSTSVHCKKIVEFTNENVDEYVDGSKFVFIFFYAPWDDHCQRILQI 64
Query: 227 WAHVA 241
+ VA
Sbjct: 65 FDQVA 69
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 137 DRFLEFSKDGMWFVKFYAPWCSHCRRMEPTWAHVAQ 244
DR L S + + V F+APW HC +M +A+
Sbjct: 13 DRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAK 48
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 155 SKDGMWFVKFYAPWCSHCRRMEPTWAHVA 241
+KD + + FYA WC CR+++P + +A
Sbjct: 28 TKDKLVVIDFYAEWCGPCRQIKPKFKKMA 56
>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
Length = 664
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 173 FVKFYAPWCSHCRRMEPTWAHVAQALY 253
FV FYAPWC RR + A LY
Sbjct: 456 FVFFYAPWCGQSRRAVEEFNIAASLLY 482
>SB_48746| Best HMM Match : fn3 (HMM E-Value=7.2)
Length = 255
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 225 LGRMWHKPCIYSRKSSQSRLYPFYSCGLTFSYPSLSYYLVFK 350
LGR W + C+ +++ Q LYP L F + + Y+ +K
Sbjct: 45 LGRDWSRVCVVYKRTGQQTLYPVRGL-LQFVLNTTTAYITWK 85
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 225 LGRMWHKPCIYSRKSSQSRLYPFYSCGLTFSYPSLSYYLVFK 350
LGR W + C+ +++ Q LYP L F + + Y+ +K
Sbjct: 106 LGRDWSRVCVVYKRTGQQTLYPVRGL-LQFVLNTTTAYITWK 146
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 510 QEGLLWEMFTIHAEKYQPHSWFYAMTHEVIKHE 608
Q L W+M+ E Y+ + WF ++ H+++ E
Sbjct: 335 QPRLDWQMWFAALESYESNPWFLSLLHKLLTGE 367
>SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78)
Length = 158
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 266 FTGVYTRLVPHAPK*VPCADSVNTKAH 186
F G T+++P PK + C D KAH
Sbjct: 64 FLGTCTKVIPLMPKQIVCVDMSKCKAH 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,456,001
Number of Sequences: 59808
Number of extensions: 508649
Number of successful extensions: 1343
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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