Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0607
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 59 8e-10
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 36 0.007
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.083
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 31 0.25
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 30 0.44
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.8
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 27 2.4
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 5.5
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.2
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 7.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 9.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.5
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 9.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 58.8 bits (136), Expect = 8e-10
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 254 SLSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 430
++S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFGP
Sbjct: 102 AISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGP 160
Query: 431 DICGPGTKKVHVIFSYK 481
D CG +VH IF +K
Sbjct: 161 DKCGV-NDRVHFIFKHK 176
Score = 57.6 bits (133), Expect = 2e-09
Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 532 THLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 684
T+LYTLIVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADW 253
Score = 35.1 bits (77), Expect = 0.012
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 622 DWDFLPPKKIKDPEAKKPEDW 684
DWD P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 622 DWDFLPPKKIKDPEAKKPEDW 684
DW P I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 35.9 bits (79), Expect = 0.007
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -1
Query: 250 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 74
N SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 73 DNASKLTTTSTT 38
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.083
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +2
Query: 296 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 475
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 476 YKGK 487
Y GK
Sbjct: 162 YDGK 165
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -1
Query: 274 FELTGER*NLASS---EVFKPLSSSGSLKNFPAVNLNFPNSFP 155
F+LTGE N ++S E F+P + SL N P +N ++ ++ P
Sbjct: 674 FKLTGESSNGSNSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 620 PIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPKTRS 724
P+G S+RP+ SRT ++ + MT +T K +S
Sbjct: 168 PLGKSYRPKASRTTSSQSVASTMTKSSTKTSKKKS 202
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 181 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 50
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 560 PTTPMKSSLTMRKLNLAT*RPIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPK 715
P+ P SS +LA+ P ++FRP+ S T+ + TSPL K
Sbjct: 314 PSYPYSSSRPSASASLAS-SPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVK 364
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 201 SDPEDDKGLKTSEDARFYLSPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADTS 359
S+PE++K LKT E ++ SPV+ + + N S++ S ++ + T+
Sbjct: 486 SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLEPSSTT 538
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 789 SPSLQVWWHWVWNVFRFVPILRLLVFGVWNSGLVIPV 679
+P+L +WW++ +F L VF + V+PV
Sbjct: 246 TPNLGLWWYFFTEMFNEFRTFFLFVFAILPLMFVLPV 282
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 102 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 245
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 580 GLHRCCRVSQ-SECTNVCRHHLCSGI 506
G+ R Q S C N+ +HH+ SGI
Sbjct: 56 GVENLTRADQASRCFNILQHHMSSGI 81
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 601 ESGDLEADWDFLPPKKIKDPEAKKPEDW 684
E L+ LP + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 99 EEKFPDDSWESNWVYS 146
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 622 DWDFLPPKKIKDPEAKKPEDW 684
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 144 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 52
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 168 GKFKLTAGKFFSDPEDDKGLKTSEDARFYLSPVSSNRSVMRVN 296
G FK+ + F ++DK KT+ Y P++ +++ ++
Sbjct: 40 GNFKVKVDERFKSLKEDKDFKTTASVDRYGRPLNQDKATKEID 82
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 786 PSLQVWWHWVWNVFR 742
P Q W W+WN FR
Sbjct: 413 PKQQGWGSWMWNSFR 427
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 177 KLTAGKFFSDPEDDKGLKTSEDARFYLSPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADT 356
+L+A + D ED+ + TS A Y+S + S+R+ + S ++ S M ++ AD+
Sbjct: 117 RLSATEGKDDDEDELVISTSNTAPTYISMIESSRA---SSTHSGTAPSIMGMSIHSRADS 173
Query: 357 SRSLT 371
T
Sbjct: 174 RAETT 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,646,973
Number of Sequences: 5004
Number of extensions: 82915
Number of successful extensions: 284
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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