Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0606
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 39 7e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 38 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.005
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.008
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.014
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.019
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.077
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.10
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.23
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 30 0.31
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.54
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.95
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 1.3
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 2.9
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 3.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.0
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 5.0
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 5.0
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 5.0
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 6.7
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 6.7
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.8
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 25 8.8
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 8.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.8
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 8.8
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 8.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683
VF+ NLD D + + F GK+ + +AVD+ GN++G+ + +D
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFD 216
Score = 34.3 bits (75), Expect = 0.019
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680
V++ NLD + + + ++F G++ ++ L D++ RGF + Y
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.1 bits (87), Expect = 7e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 689
+ V+V N+DY +++ F G V + + DK G+ +GFA IE+ P
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680
+FV NLD++ A +KE F G++R + L +D G +GF +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 128 ESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250
+ RR++V N+ Y+ RW ELK+ F +VG+V E+L +G
Sbjct: 64 QERRVYVGNLSYQVRWFELKE-FMGQVGNVLNCEILNLPNG 103
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680
++V+V NL Y+ ++KE G V N ++ +G S+G A+IEY
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEY 113
Score = 33.9 bits (74), Expect = 0.025
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 223 CRIVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQ 402
C I++ +GC I+E++ E + A+ + + GR + ++E+ R +S
Sbjct: 95 CEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVS 154
Query: 403 HREGRNNRDDK 435
N +D +
Sbjct: 155 PSASSNGKDSE 165
Score = 31.9 bits (69), Expect = 0.10
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 155 IPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKEEDV 265
+PY RW +LKDLF++ G V ++ + G+ +
Sbjct: 190 LPYNVRWQDLKDLFRQ-AGSVIRADIQMNQEGRSRGI 225
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYD 683
+++ NLD+ ++ I VF G+ +I+L DK+ G S+GFA ++Y+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680
VFV N+ Y + ++ E+F G V+ L +D + G+ +G+ E+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGK-VRNIDLAVDKDGNSRGFAVIEYD 683
+FV NLD D+ + + F G+ V+ +A D++G S+G+ + YD
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPL 692
++ V+N+ + +K +F+ G + + L D S+GF I+Y +P+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPI 391
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.077
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDH 686
K+FV + + + + F G+V + L +DKD G RGF + Y++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHP 689
K++++NL + ++ E+ K G + + L + DG+S+GF E+ +P
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNP 361
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 510 SINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYD 683
S+ +PP +VFV+N+ +++ FK G+V ++DL ++ G S G I +D
Sbjct: 87 SLGPEPPT--QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 125 TESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKEEDV 265
+E ++ VSN+P + ++K+LF + +G V L +G+ + +
Sbjct: 52 SEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGI 98
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 259 GCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEE 363
G G+VEF+ E M+ AL ++ + G+ + L+E+
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 137 RLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250
RL V N+ + W +LKD+ + K G+ + + ++ G
Sbjct: 99 RLIVENLSEDVSWQDLKDVMR-KAGEPTFTDAHRENPG 135
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGK 253
++V NIPYE ++ D+FK+ G V +L+ D +SG+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQ 44
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 355 KEETGNERRMHTSRPQHREGRN----NRDDKDNWGINKPREPENLNTYGLSLQFLDL 513
KEE+G R++ P+H + N N DD + + +P+ +N N +L L++
Sbjct: 16 KEESGESNRVNIEEPEHHDNSNKESTNLDDLNM--LEEPKYHDNSNKESTNLDDLNM 70
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 145 CIKHTIRISLDGTERFVQRESWRCGLCRIVDR*QWKRRG 261
CIK +++SLD +S G+ RI D Q RRG
Sbjct: 67 CIKCNVKVSLDEINAIFLYDSSMAGMNRIYDLVQKFRRG 105
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TESRRLFVSNIPYEFRWTELKDLFK 199
TES L++SN+P + +++ LFK
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFK 405
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 247 WKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNR 426
W +R V+F NT+ KAL L+GR + ++ N R + S H+ +
Sbjct: 118 WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVN-RTIRISSAPHQPYITKK 176
Query: 427 D 429
D
Sbjct: 177 D 177
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 314 TNSAFFIASVFVNSTIPHPLLFHCHRSTILHKPHL 210
T S+ F N TIP PL H +LHK L
Sbjct: 777 TRSSEFYMKSRENGTIPRPLYVISHLRPLLHKTSL 811
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVE 229
SR LFV+N+P + L +LF K+GDV ++
Sbjct: 194 SRYLFVTNLPRIVPYATLLELF-SKLGDVKGID 225
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 347 SFRPFNSYRCITNSAFFIASVFVNSTIPHPLLFHC 243
S F Y S FIAS F+ P FHC
Sbjct: 978 SLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHC 1012
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEE----TGNERRMHTSRPQHREGRNN 423
RG F E + + ++ YE+NGR+L ++ + ++ ++ + E R
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKVEKAKKRQAEERRR 302
Query: 424 RDDKDNWGINKPREPENLNTYGLSLQFLDLSMF 522
+ + ++ + NLN G + L +F
Sbjct: 303 KQQYKMFEVSFTDQGLNLNDTGTLETYSRLLLF 335
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348
RG F + E K + V++ YE+ GR+L
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRL 303
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 354
+GCG V+F N ++ + A+ + Y L ++ L
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRL 370
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 544 CLWQIWITKLTKPKLRRYLKWLVKYVTL 627
CL ++W+ + + K YLK V+Y TL
Sbjct: 742 CLGRVWLQRGRESKNVDYLKESVRYATL 769
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 RDRSSDXHRT-ESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD 244
+ + + HR E + V+N+P + ELK FK+ G++ + +L D+
Sbjct: 577 KSKPIEQHRNREELTVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDN 625
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDG 650
K + V N+D ++A+++ +F+ GK+ + L + +G
Sbjct: 874 KSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG 911
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD 647
+ VF+ NL + +I+E F GK+ +I + K+
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 163 RISLDGTERFVQRESWRCG 219
R +L TE V++++WRCG
Sbjct: 13 RPTLHETENHVKKKNWRCG 31
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 709 NSLYGFNGWSYSM 671
N ++GFNGWS S+
Sbjct: 58 NEIFGFNGWSSSI 70
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 709 NSLYGFNGWSYSM 671
N ++GFNGWS S+
Sbjct: 66 NEIFGFNGWSSSI 78
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 354
I+D + +G G V+F EA K A+ E++GR + L
Sbjct: 295 IMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 559 WITKLTKPKLRRYLKWLVKYVTLI 630
WI L P R +L W+ YV+++
Sbjct: 116 WIFTLASPSSRAFLCWVCGYVSVL 139
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 122 RTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD 241
R +S L V+N+ + R EL+DLF+ + G + V L D
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFR-RFGGIQRVYLAKD 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,400
Number of Sequences: 5004
Number of extensions: 58889
Number of successful extensions: 220
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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