Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0606
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 52 4e-07
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 47 1e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 42 7e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 0.001
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.002
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 38 0.007
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 38 0.007
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.036
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 35 0.062
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 35 0.082
SB_30745| Best HMM Match : UIM (HMM E-Value=1.9) 34 0.14
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 33 0.19
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.19
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.25
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.44
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.76
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 31 0.76
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 30 2.3
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.3
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 29 5.4
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 28 7.1
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23) 28 7.1
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 28 9.4
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +2
Query: 101 DRSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKEE 259
+R S +++FVSNIP+E RW LKD + VGDVA+ E+ D+ G+ +
Sbjct: 82 NRRSRSSGAPEKKVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEKGRSK 134
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 528 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPLK 695
P VFV NLDYK + K+K+ FK AG V ++ D + S+G ++++ P++
Sbjct: 182 PAASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQFETPME 237
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 528 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHP 689
P K++VA+L ++ ++E+F + G+V+ +DL D+ N SRGFA +EY P
Sbjct: 1154 PKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDP 1208
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 513 INVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689
+ QP V+V N D ++KE+ AGK+ ++ + D +G S+GF + ++ P
Sbjct: 101 MGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETP 159
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689
+++ NLD D +++E F G + + + D GNS+GF + + P
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSP 262
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683
+FV+NL + A +++I+E+F G V+ + L ++ G +G+ +EY+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYE 219
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +2
Query: 128 ESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK 253
+ LFVSN+P++ + +E+++LF K G V V L+T+ +GK
Sbjct: 169 DKHTLFVSNLPFDAKESEIEELF-SKHGVVKQVRLVTNRAGK 209
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDH 686
+ K+FV L Y+ + +KE F G++ +D+ +D G RGFA +++ H
Sbjct: 28 IGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKH 79
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 534 VKKVFVANLDYKADQAKIKEVF-KMAGKVRNIDLAVDKDGN-SRGFAVIEYD 683
VKK+FV L + KI+E F K V+ I+ + N RGF + +D
Sbjct: 102 VKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFD 153
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680
++ VFV N+ Y+A + ++KE+F G V + L D++ G +G+ EY
Sbjct: 24 LRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEY 73
Score = 35.1 bits (77), Expect = 0.062
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 ANRDRSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGK 253
A + +SS R +FV NIPYE +LK++F E VG V L+ D ++GK
Sbjct: 11 AQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE-VGPVISFRLVFDRETGK 64
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348
+ DR K +G G E+ + E A+ ++ YELNGR L
Sbjct: 57 VFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRAL 96
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 250 KRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD 429
+R G G+VEFT E MK+A+ + + E G+++ L++E SR + GR +R
Sbjct: 136 RRPGEGVVEFTTEEDMKRAIASLDKCEFYGKRIRLRQELPRS-GTSKSRSRSPSGRKSRS 194
Query: 430 DKDNWGINKPRE 465
PR+
Sbjct: 195 RSPRKRSRSPRK 206
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +1
Query: 250 KRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD 429
+++G G++EF + +KKAL + EL G+++ L + R SR + + ++
Sbjct: 201 QKQGEGVIEFATKKDLKKALRKLDGKELKGKRIRLIDSRSRSPRRSKSRSRSPSPKRDKV 260
Query: 430 DKDNWGINKPREPENLN 480
D + G + P + N+N
Sbjct: 261 DDEARGGSPPPKEGNVN 277
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 689
L+ +V+V +++++ + I+ F G + IDL+ D + +GFA +EYD P
Sbjct: 100 LMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLP 153
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 35.1 bits (77), Expect = 0.062
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 495 FTIFGSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAV 671
F + S + ++K+F+ L++ + +K+ F G + +D + K DG SRGF
Sbjct: 36 FALLPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTI--VDCVIMKRDGRSRGFGF 93
Query: 672 IEYD 683
+ Y+
Sbjct: 94 VTYE 97
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 525 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680
PP +VFV + + ++ VF+ AG + + L +D +G +RG+A + Y
Sbjct: 70 PPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVY 121
>SB_30745| Best HMM Match : UIM (HMM E-Value=1.9)
Length = 116
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 101 DRSSDXHRTESRRLFVSNIPYEFRWTELKD 190
+R S +++FVSNIP+E RW LKD
Sbjct: 82 NRRSRSSGAPEKKVFVSNIPFESRWQNLKD 111
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYD 683
+ VF+ NL + ++ ++E+F G V ++ L D K G +GF + ++
Sbjct: 56 RSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFE 105
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 107 SSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD 241
S+D R +F+ N+P++ L++LF G+V V L+ D
Sbjct: 47 SNDKAHDHQRSVFIGNLPFDIEEEPLRELF-TTCGNVESVRLIRD 90
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRG 662
+++ NL D+A ++ +F GKV + + DKD NS+G
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKG 220
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 250 KRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD 429
+R+G G+VEF + MK AL + E G+++ LK + G + R ++ ++
Sbjct: 146 RRQGEGVVEFATKDDMKTALKKLDDTEFFGKRIRLKIKDGEGDALMEDREDDQKDAEEKE 205
Query: 430 DKDNWGINKPRE 465
+ G + +E
Sbjct: 206 EVAEAGAEEQQE 217
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683
K++FV + + +++++ F+ G V+ + DK G S+G+A I ++
Sbjct: 8 KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFE 56
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 519 VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680
V P K+F+ L ++ ++KE+ G++R +L D G S+G+A EY
Sbjct: 667 VVPDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEY 721
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 528 PLVKK--VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS--RGFAVIEY 680
P++ K +FV NL Y A+ K F+ G ++ + DKD + RGF + +
Sbjct: 15 PVISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTF 69
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680
VF+ NL + + Q I +FK G + + VD +S+G A ++Y
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKY 464
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 528 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 674
P V+V NL Y + + +VF+ GKV + + DK+ SRG A I
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFI 56
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 137 RLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD 241
++FV NI ++ R ELKD F GDV Y +++ D
Sbjct: 80 KVFVGNIGFKVRARELKDFF-GYFGDVVYAQIIMD 113
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 250 KRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348
+ +G G V+F EA K+A+ M+ +EL GR L
Sbjct: 281 RSKGYGFVQFREAEAAKRAMEQMNGFELAGRPL 313
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 92 ANRDRSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKEE 259
++R R R++ R + VS +P W +LKD +E GDV + ++ D +G E
Sbjct: 367 SSRGRGPPPRRSDFR-VQVSGLPPTGSWQDLKDHMRE-AGDVLFTDVFKDGTGVVE 420
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 107 SSDXHRTESR--RLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232
SS+ +R+ S R++V N+P + R +L D+F K G +A V+L
Sbjct: 250 SSNMNRSNSNDCRVYVGNLPQDVREKDLHDIF-YKYGHIADVDL 292
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +3
Query: 537 KKVFVANL--DYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680
+ +FV L D+K + IKE+F G V +A++ +G SRGFA ++Y
Sbjct: 205 RTLFVDRLPRDFK-NGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDY 254
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 576 QAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 689
Q IK++F G V + L D+ G S G+A + YD+P
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP 78
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 250 KRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 354
+R+G G++EF+ +K+AL + ELNG+++ L
Sbjct: 131 QRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPLK 695
KK+ V +LD+ +++E F+ G++ IDL ++ + R A I + LK
Sbjct: 236 KKLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSE--KRTCAAIVFFRNLK 286
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 522 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680
+P + VF+ L ++ I E+F + G++ +I ++ K N+R F + +
Sbjct: 346 KPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENARKFCHLRF 398
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 537 KKVFVANLDYKADQAKIKEVFKMAGK--VRN---IDLAVDKDGNSRGFAVIEYDHPLKPY 701
K+ +V NL KA + + F + +R+ ++LAV+K G S GF + L +
Sbjct: 5 KRFYVGNLSVKATREDLSHHFGLDATPYLRSSCWVELAVEKSGKSLGFGFVNVPKHLADH 64
Query: 702 RLFHV**PMLYDR 740
L H+ L+D+
Sbjct: 65 -LMHLNQTKLFDK 76
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +1
Query: 253 RRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDD 432
+RG G VEF + + A+ ++ +L G ++V++ G R GR+ RD
Sbjct: 721 KRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKG--------RRSEGGGRDRRDF 772
Query: 433 KDNWGINKPREPENLNTYG 489
G + R P L+ YG
Sbjct: 773 SGRGGRDGGRRPMWLDKYG 791
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 104 RSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKE 256
+S +T RLFV P +F +L+ F E GD+ YV+++ D +E
Sbjct: 44 KSDFQDQTTMTRLFVI-CPKDFNDEDLRSKF-ESFGDIEYVQIVRDHKTRE 92
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETG 369
+GCG +E ++ KAL + H Y L GRK+ ++ G
Sbjct: 114 KGCGFLEIDDSIGYTKALNLHHSY-LGGRKINVEVTCG 150
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 265 GIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGN 372
G+V T +E K + +HR EL+GR + + G+
Sbjct: 393 GLVTMTTSEEAAKCIQHLHRTELHGRAITVDRAKGD 428
>SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23)
Length = 846
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 328 ELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSLQFL 507
EL+ + E+ + ++ RP HR+GRN + ++ PEN + G
Sbjct: 162 ELSRSQAASIEKQESVNKIEKDRPNHRQGRNKDGRRRQESRDRKPMPENRKSSGKCRNCE 221
Query: 508 DLSM 519
D+ M
Sbjct: 222 DIPM 225
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +1
Query: 223 CRIVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQ 402
CR++ + + + RG G +FT+ E KAL ++ + GR++ + R + P
Sbjct: 209 CRVITQ-EGRSRGFGYADFTSKEDYNKAL-ELNGEDCCGREIRINPANSKPSRGGGNTP- 265
Query: 403 HREGRNNRDDKDNWGINKPREPEN 474
R G R + + + + P N
Sbjct: 266 -RGGGRGRGGRGGFSGGRDQNPPN 288
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 361 ETGNERRMHTSRPQHREGRNNRDDKDNWGINKPRE 465
ETG E +H SRP + N+ DD DN + R+
Sbjct: 784 ETGEEFNLHRSRPLIHD-ENDDDDDDNGDADNGRD 817
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,764,134
Number of Sequences: 59808
Number of extensions: 429024
Number of successful extensions: 1345
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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